nf-core_modules/tests/modules/bracken/bracken/test.yml
Moritz E. Beber 9c386c5dd8
Add bracken (#1423)
* feat: add template for Bracken

* chore: update version

* refactor: change command build

* refactor: rename report variable, change quotes

* docs: remove refactored input parameter

* fix: correctly assign arguments to options

* tests: set up single and paired end tests

* style: apply prettier

* chore: change data sources to official ones

* refactor: rename test workflows

* tests: use correct input to the new UNTAR module

* chore: update md5sums
2022-03-22 16:40:21 +01:00

43 lines
1.7 KiB
YAML

- name: bracken bracken test_bracken_bracken_single_end_default_args
command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_single_end_default_args -c tests/config/nextflow.config
tags:
- bracken/bracken
- bracken
files:
- path: output/bracken/test_S.tsv
md5sum: 4a21ae14ff8a0311d55f139af5247838
- path: output/bracken/versions.yml
md5sum: ab8b1550f84a99bae80f050fe718abd0
- name: bracken bracken test_bracken_bracken_single_end_custom_args
command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_single_end_custom_args -c tests/config/nextflow.config
tags:
- bracken/bracken
- bracken
files:
- path: output/bracken/test_G.tsv
md5sum: f609b09d6edb5ebc1ea1435d1dd46cde
- path: output/bracken/versions.yml
md5sum: af87e8d4c42fbcb0469ab13912b8a9bd
- name: bracken bracken test_bracken_bracken_paired_end_default_args
command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_paired_end_default_args -c tests/config/nextflow.config
tags:
- bracken/bracken
- bracken
files:
- path: output/bracken/test_S.tsv
md5sum: 4a21ae14ff8a0311d55f139af5247838
- path: output/bracken/versions.yml
md5sum: 4602111eb25bd19a7f9d725acc5921f6
- name: bracken bracken test_bracken_bracken_paired_end_custom_args
command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_paired_end_custom_args -c tests/config/nextflow.config
tags:
- bracken/bracken
- bracken
files:
- path: output/bracken/test_G.tsv
md5sum: f609b09d6edb5ebc1ea1435d1dd46cde
- path: output/bracken/versions.yml
md5sum: d4618b01df5ac09cc366fe2ae7c13f06