millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 19:18:17 +00:00
Code Issues Releases Packages Activity
nf-core_modules/tests/software
History
Jose Espinosa-Carrasco ee90e7af77
Add default output dir for modules that create indices, updated (#336) 
* Add default output dir for modules that create indices

* Change path for index module test output

* Fix bowtie2/align tests

* Fixing bowtie/align tests

* Fix genomegenerate test

* Fixing README linting
2021-03-23 17:55:01 +00:00
..
adapterremoval new module: AdapterRemoval (#309) 2021-03-22 17:16:04 +00:00
allelecounter Add alleleCounter module (#313) 2021-03-23 14:37:53 +01:00
bandage/image Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bcftools Exchange VCF data by sarscov2 data (#261) 2021-03-09 10:04:08 +01:00
bedtools Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bismark bismark: remove underscores from process names (#303) 2021-03-22 17:46:11 +01:00
blast Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bowtie Add default output dir for modules that create indices, updated (#336) 2021-03-23 17:55:01 +00:00
bowtie2 Add default output dir for modules that create indices, updated (#336) 2021-03-23 17:55:01 +00:00
bwa Add default output dir for modules that create indices, updated (#336) 2021-03-23 17:55:01 +00:00
bwamem2 Add default output dir for modules that create indices, updated (#336) 2021-03-23 17:55:01 +00:00
bwameth Add default output dir for modules that create indices, updated (#336) 2021-03-23 17:55:01 +00:00
cat/fastq Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
cnvkit cnvkit module (#173) 2021-03-22 15:27:30 -07:00
cutadapt Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
dsh Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
fastp Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
fastqc Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
gatk4 Add gatk4/baserecalibrator (#327) 2021-03-23 18:32:37 +01:00
gffread Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
gunzip Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
ivar Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
kraken2/run Add kraken2 run module (#266) 2021-03-18 13:08:06 +00:00
methyldackel Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
minia Adding minia for viralrecon (#267) 2021-03-17 12:54:15 +01:00
minimap2/align Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
mosdepth Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
multiqc Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
optitype Add in OptiType (configbuilder, type) module(s) (#301) 2021-03-23 16:48:05 +01:00
pangolin add task.cpus to pangolin (#263) 2021-03-10 09:02:23 +01:00
picard add picard_collectwgsmetrics (#304) 2021-03-22 17:05:59 +01:00
preseq/lcextrap Fix preseq tests 2021-02-03 17:28:44 +00:00
prokka add prokka module (#298) 2021-03-23 02:51:23 -07:00
qualimap/bamqc Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
quast Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
salmon Add default output dir for modules that create indices, updated (#336) 2021-03-23 17:55:01 +00:00
samtools modified the samtools/fastq module (#339) 2021-03-23 17:43:52 +00:00
seacr/callpeak Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
seqkit/split2 Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
seqwish/induce Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
spades Add spades module (#277) 2021-03-18 13:48:38 +00:00
star Add default output dir for modules that create indices, updated (#336) 2021-03-23 17:55:01 +00:00
stringtie Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
tabix Exchange VCF data by sarscov2 data (#261) 2021-03-09 10:04:08 +01:00
tiddit/sv Update main.nf (#314) 2021-03-22 17:16:43 +00:00
trimgalore Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
ucsc/bedgraphtobigwig Change path to tests 2021-02-03 16:44:56 +00:00
unicycler Adding unicycler module (#307) 2021-03-22 18:14:24 +01:00
untar Converge test data usage (#249) 2021-03-04 10:10:57 +00:00