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nf-core_modules/tests/software/samtools
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suzannejin d6850f8312
modified the samtools/fastq module (#339) 
* new module: samtools/fastq

* solve conflict: pytest_software.yml

* solve linting conflicts

* solved EditorConfig linting problem

* Module samtools/fastq:
	* output compressed fastq.gz file(s)
	* add if conditionals for single/paired reads

* samtools/fastq: modified test.yml

* samtools/fastq: modified main.nf to avoid duplicated part of the script section

Co-authored-by: suzannejin <suzanne.jin@crg.eu>
2021-03-23 17:43:52 +00:00
..
faidx Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
fastq modified the samtools/fastq module (#339) 2021-03-23 17:43:52 +00:00
flagstat Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
idxstats Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
index Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
merge add samtools merge (#296) 2021-03-22 13:48:23 +01:00
mpileup Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
sort Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
stats Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
view Converge test data usage (#249) 2021-03-04 10:10:57 +00:00