mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
3d720a24fd
* Add allelecount module * Add bed file input * Added bai file * Changed conda version * Update main.nf * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Add allelecount module * Add bed file input * Added bai file * Changed conda version * Update main.nf * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Remove newline * Fix pytest_software.yml * Update pytest_software.yml Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
14 lines
641 B
Text
14 lines
641 B
Text
#!/usr/bin/env nextflow
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { ALLELECOUNTER } from '../../../software/allelecounter/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_allelecounter {
|
|
|
|
def input = []
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file("${launchDir}/tests/data/genomics/sarscov2/bam/test_paired_end.sorted.bam", checkIfExists: true),
|
|
file("${launchDir}/tests/data/genomics/sarscov2/bam/test_paired_end.sorted.bam.bai", checkIfExists: true)]
|
|
positions = [ file("${launchDir}/tests/data/genomics/sarscov2/bed/test.bed", checkIfExists: true) ]
|
|
ALLELECOUNTER ( input, positions )
|
|
}
|