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1.0 KiB
1.0 KiB
Updating the docker container and making a new module release
Cell Ranger is a commercial tool from 10X Genomics. The container provided for the cellranger nf-core module is not provided nor supported by 10x Genomics. Updating the Cell Ranger versions in the container and pushing the update to Dockerhub needs to be done manually.
-
Navigate to the appropriate download page. - Cell Ranger: download the tar ball of the desired Cell Ranger version with
curl
orwget
. Place this file in the same folder where the Dockerfile lies. -
Edit the Dockerfile. Update the Cell Ranger versions in this line:
ENV CELLRANGER_VER=<VERSION>
-
Create and test the container:
docker build . -t nfcore/cellranger:<VERSION>
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Access rights are needed to push the container to the Dockerhub nfcore organization, please ask a core team member to do so.
docker push nfcore/cellranger:<VERSION>