mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-20 15:22:04 +00:00
f080015754
* style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
39 lines
1 KiB
YAML
39 lines
1 KiB
YAML
name: cnvpytor_callcnvs
|
|
description: command line tool for calling CNVs in whole genome sequencing data
|
|
- CNV calling
|
|
tools:
|
|
- cnvpytor:
|
|
description: calling CNVs using read depth
|
|
homepage: https://github.com/abyzovlab/CNVpytor
|
|
documentation: https://github.com/abyzovlab/CNVpytor
|
|
tool_dev_url: https://github.com/abyzovlab/CNVpytor
|
|
doi: "10.1101/2021.01.27.428472v1"
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test']
|
|
- pytor:
|
|
type: file
|
|
description: cnvpytor root file
|
|
pattern: "*.{pytor}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- cnvs:
|
|
type: file
|
|
description: file containing identified copy numer variations
|
|
pattern: "*.{tsv}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@sima-r"
|