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nf-core_modules/modules/samtools
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Matthieu Muffato f0a86eaf5b
Multithreaded samtools commands (#2080) 
* Multithreaded samtools commands

* Updated the checksums since the BAM files include the actual command line

Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
2022-09-26 17:44:36 +01:00
..
ampliconclip Multithreaded samtools commands (#2080) 2022-09-26 17:44:36 +01:00
bam2fq Test --no-name to solve inconsistent checksums 2022-05-03 15:18:09 +02:00
collate samtools collate module (#2078) 2022-09-21 14:12:59 +01:00
collatefastq Add samtools/collatefastq module (#1536) 2022-04-20 10:05:17 +02:00
convert Reduce resource requests (#2021) 2022-09-07 10:33:05 +02:00
depth Multithreaded samtools commands (#2080) 2022-09-26 17:44:36 +01:00
dict Added the samtools/dict module (#1922) 2022-07-26 22:13:19 +01:00
faidx Added the optional .gzi output of "samtools faidx" (#1935) 2022-09-08 13:35:23 +01:00
fastq Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
fixmate Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
flagstat Fix/samtools flagstat (#1979) 2022-08-29 13:11:58 +02:00
idxstats Multithreaded samtools commands (#2080) 2022-09-26 17:44:36 +01:00
index Samtools version update (#1507) 2022-04-11 14:26:28 +02:00
markdup samtools markdup module (#2087) 2022-09-21 15:39:10 +01:00
merge [samtools] add optional csi output (#2064) 2022-09-20 21:08:29 +01:00
mpileup Reduce resource requests (#2021) 2022-09-07 10:33:05 +02:00
sort [samtools] add optional csi output (#2064) 2022-09-20 21:08:29 +01:00
stats fix samtools stats thread usage (#1975) 2022-08-29 12:05:47 +02:00
view Update samtools view (#2098) 2022-09-23 16:52:01 +02:00