mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2025-01-05 13:52:09 -05:00
5a49d2c1bf
* 📦 NEW: Add isoseq3/cluster module * 🐛FIX: Fix reports channel and add .pbi to it * 🐛FIX: Fix report channel definition * 👌IMPROVE: Move .pbi file into reports channel * 👌IMPROVE: remove --use_qvs option from command line * 👌 IMPROVE: Add in addParams removed options from command line * 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 👌 IMPROVE: The module accept one channel (primers moved into the first channel) * 📦 NEW: Add galgal6 chr30 test data * 📦 NEW: Add bamtools module * 👌 IMPROVE: Ignore test data * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: add singletons parameter and improve outputs * 🐛 FIX: Update test with last module model * 👌 IMPROVE: Add test tag * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update test data config * 👌 IMPROVE: Remove pbi from input files * 👌 IMPROVE: Remove unused index * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Fill contains args * 📦 NEW: Add isoseq3/cluster module * 🐛FIX: Fix reports channel and add .pbi to it * 🐛FIX: Fix report channel definition * 👌IMPROVE: Move .pbi file into reports channel * 👌IMPROVE: remove --use_qvs option from command line * 👌 IMPROVE: Add in addParams removed options from command line * 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 👌 IMPROVE: The module accept one channel (primers moved into the first channel) * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: add singletons parameter and improve outputs * 🐛 FIX: Update test with last module model * 👌 IMPROVE: Add test tag * 👌 IMPROVE: Update test data config * 👌 IMPROVE: Remove pbi from input files * 👌 IMPROVE: Remove unused index * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Fill contains args * 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 📦 NEW: Add galgal6 chr30 test data * 📦 NEW: Add bamtools module * 👌 IMPROVE: Ignore test data * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Update code to new versions capture + better output channels * 👌 IMPROVE: Update with new versions.yml file * 🐛 FIX: Update meta.yml + correct typos * 👌 IMPROVE: Clean output file names + correct typo * 🐛 FIX: Remove bamtools/split module from isoseq3/cluster
28 lines
1.2 KiB
YAML
28 lines
1.2 KiB
YAML
- name: isoseq3 cluster test_isoseq3_cluster
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command: nextflow run tests/modules/isoseq3/cluster -entry test_isoseq3_cluster -c tests/config/nextflow.config
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tags:
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- isoseq3
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- isoseq3/cluster
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files:
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- path: output/isoseq3/test.bam
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md5sum: ca8277f4d8fe1bba68ba266c42b46dd1
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- path: output/isoseq3/test.bam.pbi
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md5sum: cbc06657b4543faba7ff886b3b12b862
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- path: output/isoseq3/test.cluster
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md5sum: d5059d856763fc5591332980bfc0d57b
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- path: output/isoseq3/test.cluster_report.csv
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md5sum: 342d97dc10aedf80a45977edcb491c62
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- path: output/isoseq3/test.hq.bam
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md5sum: e93ea85776c35c246364d954032c2ea9
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- path: output/isoseq3/test.hq.bam.pbi
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md5sum: 5a8ea7668e8f8e173478b28cbb6ab515
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- path: output/isoseq3/test.lq.bam
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md5sum: 4ea0e4f4a6cc689dcc275adcdf688fad
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- path: output/isoseq3/test.lq.bam.pbi
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md5sum: f5edc24711b2c8d6474d60cb69022af0
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- path: output/isoseq3/test.singletons.bam
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md5sum: 73d131920bd42e1fc5fca2e6cb71f4b2
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- path: output/isoseq3/test.singletons.bam.pbi
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md5sum: 73980863be4b5bda2846325c737f0b5e
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- path: output/isoseq3/test.transcriptset.xml
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contains: [ 'PacBio.DataSet.TranscriptSet' ]
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