millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-31 03:32:10 -05:00
Code Issues Releases Packages Activity
nf-core_modules/modules/bclconvert
History
Matthias De Smet a9521de5ac
bclconvert: Update Dockerfile (#1819) 
* Update Dockerfile

* Output only top level InterOp files

* Update tag
2022-06-28 11:11:16 +01:00
..
.gitignore Module/bclconvert (#1485) 2022-04-21 15:39:22 +02:00
Dockerfile bclconvert: Update Dockerfile (#1819) 2022-06-28 11:11:16 +01:00
LICENSE Module/bclconvert (#1485) 2022-04-21 15:39:22 +02:00
main.nf bclconvert: Update Dockerfile (#1819) 2022-06-28 11:11:16 +01:00
meta.yml bump bclconvert version (#1806) 2022-06-24 07:14:42 +02:00
README.md Module/bclconvert (#1485) 2022-04-21 15:39:22 +02:00

README.md

Updating the docker container and making a new module release

bcl-convert is a commercial tool from Illumina. The container provided for the bcl-convert nf-core module is not provided nor supported by Illumina. Updating the bcl-convert versions in the container and pushing the update to Dockerhub needs to be done manually.

  1. Navigate to the appropriate download page. - BCL Convert: download the rpm of the desired bcl-convert version with curl or wget.

  2. Unpack the RPM package using rpm2cpio bcl-convert-*.rpm | cpio -i --make-directories. Place the executable located in <unpack_dir>/usr/bin/bcl-convert in the same folder where the Dockerfile lies.

  3. Create and test the container:

    docker build . -t nfcore/bclconvert:<VERSION>

  4. Access rights are needed to push the container to the Dockerhub nfcore organization, please ask a core team member to do so.

    docker push nfcore/bclconvert:<VERSION>