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Fix YAML deprecation

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Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
This commit is contained in:
Thomas A. Christensen II 2022-01-05 14:12:30 -06:00
parent 157105379e
commit f880f47b3d
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 3 additions and 3 deletions
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nfdocs-parser.py
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@ -68,11 +68,11 @@ with open(nextflow_path) as nextflow_file:
for i in pos: for i in pos:
doc_yaml = doc_yaml + nextflow_lines[i].replace(DOC_STARTER, "") doc_yaml = doc_yaml + nextflow_lines[i].replace(DOC_STARTER, "")
if proc_type == "process": if proc_type == "process":
process_docstrings[proc_name] = yaml.load(doc_yaml) process_docstrings[proc_name] = yaml.load(doc_yaml, Loader=yaml.SafeLoader)
elif proc_type == "function": elif proc_type == "function":
function_docstrings[proc_name] = yaml.load(doc_yaml) function_docstrings[proc_name] = yaml.load(doc_yaml, Loader=yaml.SafeLoader)
elif proc_type == "workflow": elif proc_type == "workflow":
workflow_docstrings[proc_name] = yaml.load(doc_yaml) workflow_docstrings[proc_name] = yaml.load(doc_yaml, Loader=yaml.SafeLoader)
# Display the results so far # Display the results so far
print(process_docstrings) print(process_docstrings)