2024-12-01 21:56:11 -05:00
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< img src = /graphics/millironx.svg alt = "Milliron X" > < / object > < h1 class = font-small-caps > Milliron X< / h1 > < / header > < div class = row > < aside > < nav > < a href = / > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 576 512" > < path d = "M511.8 287.6H576V240L288.4.0.0 240v47.6H64.1V512H224V352H352V512H512.8l-1-224.4z" / > < / svg > < / span > Home< / a >
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< a href = /websites/ > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 512 512" > < path d = "M0 32H512V480H0V32zm160 72v48H448V104H160zm-32-8H64v64h64V96z" / > < / svg > < / span > Websites< / a > < / nav > < / aside > < main > < style > . motto :: before { background-image : url ( /images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_6000x2000_fill_q75_box_center.jpg ) } < / style > < div class = motto title > < div class = motto-inside > < h1 id = motto > paper< / h1 > < / div > < / div > < section > < div > < / div > < div class = card > < a class = category-button href = /categories/paper/ title = Paper > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M96 0C43 0 0 43 0 96V416c0 53 43 96 96 96H384h32 32V448H416V384h32V0H416 384 96zm0 384H352v64H96c-17.7.0-32-14.3-32-32s14.3-32 32-32zm32-256H352v32H128V128zm224 64v32H128V192H352z" / > < / svg > < / span > < / a > < div class = card-body > < div class = card-title > < a href = https://doi.org/10.1101/2023.10.20.563221 > < h3 > nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling< / h3 > < / a > < / div > < div > 23 Oct 2023< / div > < a href = /people/sofia-stamouli/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Sofia Stamouli< / a >
< a href = /people/moritz-e.-beber/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Moritz E. Beber< / a >
< a href = /people/tanja-normark/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Tanja Normark< / a >
< a href = /people/thomas-a.-christensen-ii/ class = "card-link
bolder">< span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Thomas A. Christensen II< / a >
< a href = /people/lili-andersson-li/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Lili Andersson-Li< / a >
< a href = /people/maxime-borry/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Maxime Borry< / a >
< a href = /people/mahwash-jamy/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Mahwash Jamy< / a >
< a href = /people/nf-core-community/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > nf-core community< / a >
< a href = /people/james-a.-fellows-yate/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > James A. Fellows Yate< / a > < p class = card-text > Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
< strong > < small > < a href = https://doi.org/10.1101/2023.10.20.563221 > Read more » < / a > < / small > < / strong > < / p > < div class = card-footer > < a href = /tags/genomics/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > genomics< / a > < / div > < / div > < / div > < div class = card > < a class = category-button href = /categories/paper/ title = Paper > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M96 0C43 0 0 43 0 96V416c0 53 43 96 96 96H384h32 32V448H416V384h32V0H416 384 96zm0 384H352v64H96c-17.7.0-32-14.3-32-32s14.3-32 32-32zm32-256H352v32H128V128zm224 64v32H128V192H352z" / > < / svg > < / span > < / a > < div class = card-body > < div class = card-title > < a href = https://doi.org/10.1021/acsestengg.2c00107 > < h3 > Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation< / h3 > < / a > < / div > < div > 02 Sep 2022< / div > < a href = /people/carson-j.-silsby/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Carson J. Silsby< / a >
< a href = /people/jonathan-r.-counts/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Jonathan R. Counts< / a >
< a href = /people/thomas-a.-christensen-ii/ class = "card-link
bolder">< span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Thomas A. Christensen II< / a >
< a href = /people/mark-f.-roll/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Mark F. Roll< / a >
< a href = /people/kristopher-v.-waynant/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Kristopher V. Waynant< / a >
< a href = /people/james-g.-moberly/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > James G. Moberly< / a > < p class = card-text > Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
< strong > < small > < a href = https://doi.org/10.1021/acsestengg.2c00107 > Read more » < / a > < / small > < / strong > < / p > < div class = card-footer > < a href = /tags/diffusion/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > diffusion< / a >
< a href = /tags/hydrogels/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > hydrogels< / a >
< a href = /tags/ionic-strength/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > ionic strength< / a >
< a href = /tags/polymers/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > polymers< / a >
< a href = /tags/transport-properties/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > transport properties< / a > < / div > < / div > < / div > < div class = card > < a class = category-button href = /categories/paper/ title = Paper > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M96 0C43 0 0 43 0 96V416c0 53 43 96 96 96H384h32 32V448H416V384h32V0H416 384 96zm0 384H352v64H96c-17.7.0-32-14.3-32-32s14.3-32 32-32zm32-256H352v32H128V128zm224 64v32H128V192H352z" / > < / svg > < / span > < / a > < div class = card-body > < div class = card-title > < a href = https://doi.org/10.1016/j.vetmic.2022.109447 > < h3 > Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease< / h3 > < / a > < / div > < div > 27 Apr 2022< / div > < a href = /people/tyler-doerksen/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Tyler Doerksen< / a >
< a href = /people/thomas-a.-christensen-ii/ class = "card-link
bolder">< span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Thomas A. Christensen II< / a >
< a href = /people/andrea-lu/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Andrea Lu< / a >
< a href = /people/lance-noll/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Lance Noll< / a >
< a href = /people/jianfa-bai/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Jianfa Bai< / a >
< a href = /people/jamie-henningson/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Jamie Henningson< / a >
< a href = /people/rachel-palinski/ class = card-link > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M224 256A128 128 0 10224 0a128 128 0 100 256zM448 512 384 304H64L0 512H448z" / > < / svg > < / span > Rachel Palinski< / a > < p class = card-text > Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
< strong > < small > < a href = https://doi.org/10.1016/j.vetmic.2022.109447 > Read more » < / a > < / small > < / strong > < / p > < div class = card-footer > < a href = /tags/porcine-rotavirus/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > porcine rotavirus< / a >
< a href = /tags/porcine-enteric-disease/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > porcine enteric disease< / a >
< a href = /tags/virome/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > virome< / a >
< a href = /tags/rotavirus/ class = "icon-link card-link" > < span class = "fa-container fa-fw" > < svg xmlns = "http://www.w3.org/2000/svg" viewBox = "0 0 448 512" > < path d = "M0 32V256L224 480 448 256 224 32H0zm112 80a32 32 0 110 64 32 32 0 110-64z" / > < / svg > < / span > rotavirus< / a > < / div > < / div > < / div > < / section > < / main > < / div > < footer > < img src = /graphics/brandedbull.min.svg height = 95rem > < p > © 2023 Thomas A. Christensen II< br > Licensed
< a rel = license href = http://creativecommons.org/licenses/by/4.0/ > CC-BY 4.0< / a > < br > Built with < a href = https://gohugo.io > Hugo< / a > v0.111.3< / p > < / footer > < script data-goatcounter = https://millironx.goatcounter.com/count async src = //gc.zgo.at/count.js > < / script > < / body > < / html >
