Add thesis abstract
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Academia.html
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Academia.html
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@ -5,6 +5,52 @@ blurImageUrl: /img/library_blur.jpg
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motto: Academic Publications and Presentations
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---
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<dl>
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<dt>Polyoxometalate Incorporation and Effects on Proton Transport in
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Hydrogel Polymers</dt>
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<dd>
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A Thesis Presented for the Degree of Master of Science of Chemical
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Engineering in the University of Idaho by Thomas Allen Christensen II
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<br />
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Major Professor: James G. Moberly, Ph.D.
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<br />
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Committee Members: Kristopher Waynant, Ph.D.; Mark Roll, Ph.D.
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<br />
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August 2020
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<br />
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<a href="#">Proquest Thesis Link (pending)</a>
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<a data-toggle="collapse" data-target="#thesis-abstract" role="button">Abstract <span class="caret"></span></a>
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<div class="collapse" id="thesis-abstract">
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<p class="font-serif">
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Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve
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the challenges posed by free proton generation during remediation of
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trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In
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this thesis, the challenges posed by systems that contain both diffusion and
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reaction processes for protons are considered mathematically, and a computer
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simulation to was developed to prove the relationship between diaphragm cell lag
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period and reactive capabilities of membranes. Two polyoxometalate compounds,
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sodium decavanadate and alumina sulfate, were successfully incorporated into a
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poly(vinyl alcohol) hydrogel membrane, and the diffusivity changes associated
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with each compound was determined. It was found that the diffusivity of protons
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through an unmodified 10% w/v poly(vinyl alcohol) membrane was 1.76 ×
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10<sup>-5</sup> cm<sup>2</sup> s<sup>-1</sup>, the diffusivity through a 10%/2%
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w/w/v poly(vinyl alcohol)/sodium decavanadate membrane was 3.10 × 10<sup>-6</sup>
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cm<sup>2</sup> s<sup>-1</sup>, and the diffusivity through a 10%/2% w/w/v
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poly(vinyl alcohol)/alumina sulfate membrane was 3.32 × 10<sup>-7</sup>
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cm<sup>2</sup> s<sup>-1</sup>. Through analysis of the diaphragm cell lag
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period, it was found the incorporation of sodium decavanadate did not increase
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the reactivity of a poly(vinyl alcohol) hydrogel, and incorporation of alumina
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sulfate lowered the reactivity. These results indicate that polyoxometalate
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integration into hydrogel membranes is feasible, but does not provide any
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advantage to a bioremediation scenario.
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</p>
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</div>
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</dd>
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</dl>
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<hr />
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<dl>
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<dt>Metagenomic analysis of rumen populations in week-old calves as
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altered by maternal late gestational nutrition and mode of delivery</dt>
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@ -15,10 +61,37 @@ motto: Academic Publications and Presentations
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<br />
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1<sup>st</sup> Place Undergraduate Poster Competition
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<br />
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<a data-toggle="collapse" data-target="#metagenomics-abstract" role="button">Abstract <span class="caret"></span></a>
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<a data-toggle="collapse" data-target="#metagenomics-abstract" role="button">Abstract <span
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class="caret"></span></a>
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<div class="collapse" id="metagenomics-abstract">
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<p class="font-serif">Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean. Late gestating Angus cows were randomly allocated to one of three treatment groups: control (<b>CON</b>; n = 6), caesarean section (<b>CS</b>; n = 4), and nutrient restricted (<b>NR</b>; n = 5), where CON were fed DDGS and hay to meet NRC requirements and calved naturally; CS were fed similarly to CON and calves were born via caesarean section; and NR were fed at a level to reduce BCS by 1.5-2.0 points over the last trimester compared to CON and calved naturally. Rumen fluid was collected via oral lavage prior to partition from cows and at d 7 from calves. Microbial DNA was isolated from the rumen fluid and metagenomic shotgun sequencing was performed using the Illumina HiSeq 2500 platform. Sequence data were analyzed using Metaxa2 for taxonomic assignment followed by QIIME1 and QIIME2 to determine differential abundance and alpha- and beta-diversity differences. There were no significant differences in alpha-diversity as measured by shannon index across treatment groups for cows (<em>P</em> = 0.239), but there were significant differences for calves (<em>P</em> = 0.015). Similarly, there were no significant differences in beta-diversity as measured by the bray-curtis dissimilarity matrix for cows (<em>P</em> = 0.059), but there were significant differences for calves (<em>P</em> = 0.007). Alpha-diversity differed (<em>P</em> < 0.001) between cows and calves, with cows having increased species richness compared to calves. Beta-diversity also differed (<em>P</em> = 0.001) between cows and calves. At total of 410 taxa were differentially abundant (<em>P</em> < 0.01) between cows and calves. These results suggest that the mature rumen microbiome of cows is able to withstand changes in feed intake, however the calf microbiome is susceptible to alteration by maternal factors. These data also suggest that there may be opportunities to develop management strategies during late gestation that influence calf health and performance long-term.</p>
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<p><b>Key words</b>: gestation, metagenomics, microbiome, rumen</p>
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<p class="font-serif">Early colonization of the rumen microbiome is critical to host health and long term
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performance. Factors that influence early colonization include maternal factors such as gestational
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nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of
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delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient
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restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome
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composition differs in calves born vaginally versus caesarean. Late gestating Angus cows were randomly
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allocated to one of three treatment groups: control (<b>CON</b>; n = 6), caesarean section (<b>CS</b>; n
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= 4), and nutrient restricted (<b>NR</b>; n = 5), where CON were fed DDGS and hay to meet NRC
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requirements and calved naturally; CS were fed similarly to CON and calves were born via caesarean
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section; and NR were fed at a level to reduce BCS by 1.5-2.0 points over the last trimester compared to
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CON and calved naturally. Rumen fluid was collected via oral lavage prior to partition from cows and at
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d 7 from calves. Microbial DNA was isolated from the rumen fluid and metagenomic shotgun sequencing was
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performed using the Illumina HiSeq 2500 platform. Sequence data were analyzed using Metaxa2 for
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taxonomic assignment followed by QIIME1 and QIIME2 to determine differential abundance and alpha- and
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beta-diversity differences. There were no significant differences in alpha-diversity as measured by
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shannon index across treatment groups for cows (<em>P</em> = 0.239), but there were significant
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differences for calves (<em>P</em> = 0.015). Similarly, there were no significant differences in
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beta-diversity as measured by the bray-curtis dissimilarity matrix for cows (<em>P</em> = 0.059), but
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there were significant differences for calves (<em>P</em> = 0.007). Alpha-diversity differed (<em>P</em>
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< 0.001) between cows and calves, with cows having increased species richness compared to calves.
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Beta-diversity also differed (<em>P</em> = 0.001) between cows and calves. At total of 410 taxa were
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differentially abundant (<em>P</em>
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< 0.01) between cows and calves. These results suggest that the mature rumen microbiome of cows is
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able to withstand changes in feed intake, however the calf microbiome is susceptible to
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alteration by maternal factors. These data also suggest that there may be opportunities to
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develop management strategies during late gestation that influence calf health and performance
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long-term.</p>
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<p><b>Key words</b>: gestation, metagenomics, microbiome, rumen</p>
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</div>
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</dd>
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@ -26,7 +99,8 @@ motto: Academic Publications and Presentations
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<dt>The ChemE Car that Cud: Entry and Documentation Packet to AIChE ChemE Car Contest</dt>
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<dd>
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Thomas Christensen II, Andrew Halverson, Kennedee True, Seth Messick, Amanda Christensen, Caleb Richmond, Alexander Brown, & Jake Maksin with Dr. David Bagley
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Thomas Christensen II, Andrew Halverson, Kennedee True, Seth Messick, Amanda Christensen, Caleb Richmond,
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Alexander Brown, & Jake Maksin with Dr. David Bagley
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<br />
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Rocky Mountain Regional AIChE Student Conference ● Golden, CO ● April 6, 2019
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<br />
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@ -36,7 +110,12 @@ motto: Academic Publications and Presentations
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<a data-toggle="collapse" data-target="#cheme-car" role="button">Abstract <span class="caret"></span></a>
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<div class="collapse" id="cheme-car">
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<p class="font-serif">The ChemE Car That Cud showcases Wyoming’s dominant industries of agriculture and mining by utilizing rumen fluid from a cannulated beef cow to generate hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct of uranium that is often obtained from Wyoming’s mines, to time the car’s stop. The concentration of cesium-137 source is measured using the radioactive decay of cesium shielded by aluminum. The painted aluminum chassis was obtained from a previous team at UW, and modified using plastic k’nex toys to adapt to the current power source and stopping mechanism.</p>
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<p class="font-serif">The ChemE Car That Cud showcases Wyoming’s dominant industries of agriculture and
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mining by utilizing rumen fluid from a cannulated beef cow to generate hydrogen to be used in a hydrogen
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fuel cell and radioactive cesium, a byproduct of uranium that is often obtained from Wyoming’s mines, to
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time the car’s stop. The concentration of cesium-137 source is measured using the radioactive decay of
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cesium shielded by aluminum. The painted aluminum chassis was obtained from a previous team at UW, and
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modified using plastic k’nex toys to adapt to the current power source and stopping mechanism.</p>
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</div>
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</dd>
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@ -44,18 +123,30 @@ motto: Academic Publications and Presentations
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<dt>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</dt>
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<dd>
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Thomas A. Christensen II, Samuel R. Wolfe, Jonathan Counts, Mark F. Roll, Kristopher V. Waynant, James G. Moberly
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<br />
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AIChE Annual Meeting ● Pittsburgh, PA ● October 29, 2018
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<br />
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3<sup>rd</sup> Place Environmental III Division Undergraduate Poster Competition
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<br />
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<a href="https://aiche.confex.com/aiche/2018/meetingapp.cgi/Paper/545790">Conference Schedule Listing</a>
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<a data-toggle="collapse" data-target="#pva-aiche" role="button">Abstract <span class="caret"></span></a>
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<div class="collapse" id="pva-aiche">
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<p class="font-serif">Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell. Measured effective diffusion coefficient of each species was (cm<sup>2</sup>/s ×10<sup>6</sup>): 14.0 ± 1.91 for H+ ions, 12.4 ± 1.64 for TCE, 7.83 ± 0.54 for cis-1,2-dichloroethylene (DCE), and 4.68 ± 4.14 for vinyl chloride. These results aid in engineering biobeads and suggest that CA-PVA hydrogel blends are effective in slowing diffusion of protons, buffering acids produced by trichloroethylene metabolism, and remains suitable for encapsulation of microorganisms involved in bioremediation.</p>
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</div>
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Thomas A. Christensen II, Samuel R. Wolfe, Jonathan Counts, Mark F. Roll, Kristopher V. Waynant, James G.
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Moberly
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<br />
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AIChE Annual Meeting ● Pittsburgh, PA ● October 29, 2018
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<br />
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3<sup>rd</sup> Place Environmental III Division Undergraduate Poster Competition
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<br />
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<a href="https://aiche.confex.com/aiche/2018/meetingapp.cgi/Paper/545790">Conference Schedule Listing</a>
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<a data-toggle="collapse" data-target="#pva-aiche" role="button">Abstract <span class="caret"></span></a>
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<div class="collapse" id="pva-aiche">
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<p class="font-serif">Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique
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challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE
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is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits
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remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for
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protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is
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unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel
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membranes, we used a modified diaphragm cell. Measured effective diffusion coefficient of each species
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was (cm<sup>2</sup>/s ×10<sup>6</sup>): 14.0 ± 1.91 for H+ ions, 12.4 ± 1.64 for TCE, 7.83 ± 0.54 for
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cis-1,2-dichloroethylene (DCE), and 4.68 ± 4.14 for vinyl chloride. These results aid in engineering
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biobeads and suggest that CA-PVA hydrogel blends are effective in slowing diffusion of protons,
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buffering acids produced by trichloroethylene metabolism, and remains suitable for encapsulation of
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microorganisms involved in bioremediation.</p>
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</div>
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</dd>
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<hr />
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@ -68,7 +159,8 @@ motto: Academic Publications and Presentations
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<br />
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3<sup>rd</sup> Place Fast-Pitch Science Presentation Contest
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<br />
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<a href="https://web.archive.org/web/20190928024416/https://inbre.uidaho.edu/research/research-conference/">Awards Listing</a>
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<a href="https://web.archive.org/web/20190928024416/https://inbre.uidaho.edu/research/research-conference/">Awards
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Listing</a>
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</dd>
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<hr />
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@ -81,11 +173,25 @@ motto: Academic Publications and Presentations
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<br />
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Undergraduate Poster Competition
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<br />
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<a href="https://eventmobi.com/idahoinbre2018/people/c861bd6f-f4a7-4d67-a59a-199e34515776/387725dc-c893-44b6-b611-0abdf5fbcf6e">Conference Schedule Listing</a>
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<a
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href="https://eventmobi.com/idahoinbre2018/people/c861bd6f-f4a7-4d67-a59a-199e34515776/387725dc-c893-44b6-b611-0abdf5fbcf6e">Conference
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Schedule Listing</a>
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<a data-toggle="collapse" data-target="#pva-inbre" role="button">Abstract <span class="caret"></span></a>
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<div class="collapse" id="pva-inbre">
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<p class="font-serif">Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA. To measure the effective diffusion coefficient of H+ ions through a PVA membrane cross-linked with boric acid and calcium ions, we used a modified diaphragm cell. We found the effective diffusion coefficient to be 1.40 × 10<sup>-5</sup> ± 1.91 × 10<sup>-6</sup> cm<sup>2</sup>/s, a nearly seven-fold decrease in diffusivity compared to protons in water, with an unexpected significant but as of yet unquantified adsorption capacity. These results suggest that polyvinylalginate is effective in slowing diffusion of protons and buffering these acids produced by trichloroethylene metabolism, and remains suitable for encapsulation of microorganisms involved in bioremediation.</p>
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<p class="font-serif">Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique
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challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising
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remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the
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ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful
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shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective
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biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic
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products through PVA. To measure the effective diffusion coefficient of H+ ions through a PVA membrane
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cross-linked with boric acid and calcium ions, we used a modified diaphragm cell. We found the effective
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diffusion coefficient to be 1.40 × 10<sup>-5</sup> ± 1.91 × 10<sup>-6</sup> cm<sup>2</sup>/s, a nearly
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seven-fold decrease in diffusivity compared to protons in water, with an unexpected significant but as
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of yet unquantified adsorption capacity. These results suggest that polyvinylalginate is effective in
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slowing diffusion of protons and buffering these acids produced by trichloroethylene metabolism, and
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remains suitable for encapsulation of microorganisms involved in bioremediation.</p>
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</div>
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</dd>
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</dl>
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