Compare commits
2 commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
f2c2499279 | ||
| d46d71ba71 |
4
.envrc
|
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@ -1,4 +0,0 @@
|
|||
use flake
|
||||
layout node
|
||||
mkdir -p "${HOME}/Library/Application Support/SourceGit"
|
||||
echo "${PATH}" > "${HOME}/Library/Application Support/SourceGit/PATH"
|
||||
191
.gitignore
vendored
|
|
@ -1,191 +0,0 @@
|
|||
### Jekyll gitignore ###
|
||||
_site/
|
||||
.sass-cache/
|
||||
.jekyll-cache/
|
||||
.jekyll-metadata
|
||||
|
||||
### Hugo gitignore ###
|
||||
# Generated files by hugo
|
||||
/public/
|
||||
/resources/_gen/
|
||||
/assets/jsconfig.json
|
||||
hugo_stats.json
|
||||
|
||||
# Executable may be added to repository
|
||||
hugo.exe
|
||||
hugo.darwin
|
||||
hugo.linux
|
||||
|
||||
# Temporary lock file while building
|
||||
/.hugo_build.lock
|
||||
|
||||
### Node gitignore ###
|
||||
|
||||
# Logs
|
||||
logs
|
||||
*.log
|
||||
npm-debug.log*
|
||||
yarn-debug.log*
|
||||
yarn-error.log*
|
||||
lerna-debug.log*
|
||||
.pnpm-debug.log*
|
||||
|
||||
# Diagnostic reports (https://nodejs.org/api/report.html)
|
||||
report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
|
||||
|
||||
# Runtime data
|
||||
pids
|
||||
*.pid
|
||||
*.seed
|
||||
*.pid.lock
|
||||
|
||||
# Directory for instrumented libs generated by jscoverage/JSCover
|
||||
lib-cov
|
||||
|
||||
# Coverage directory used by tools like istanbul
|
||||
coverage
|
||||
*.lcov
|
||||
|
||||
# nyc test coverage
|
||||
.nyc_output
|
||||
|
||||
# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
|
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.grunt
|
||||
|
||||
# Bower dependency directory (https://bower.io/)
|
||||
bower_components
|
||||
|
||||
# node-waf configuration
|
||||
.lock-wscript
|
||||
|
||||
# Compiled binary addons (https://nodejs.org/api/addons.html)
|
||||
build/Release
|
||||
|
||||
# Dependency directories
|
||||
node_modules/
|
||||
jspm_packages/
|
||||
|
||||
# Snowpack dependency directory (https://snowpack.dev/)
|
||||
web_modules/
|
||||
|
||||
# TypeScript cache
|
||||
*.tsbuildinfo
|
||||
|
||||
# Optional npm cache directory
|
||||
.npm
|
||||
|
||||
# Optional eslint cache
|
||||
.eslintcache
|
||||
|
||||
# Optional stylelint cache
|
||||
.stylelintcache
|
||||
|
||||
# Microbundle cache
|
||||
.rpt2_cache/
|
||||
.rts2_cache_cjs/
|
||||
.rts2_cache_es/
|
||||
.rts2_cache_umd/
|
||||
|
||||
# Optional REPL history
|
||||
.node_repl_history
|
||||
|
||||
# Output of 'npm pack'
|
||||
*.tgz
|
||||
|
||||
# Yarn Integrity file
|
||||
.yarn-integrity
|
||||
|
||||
# dotenv environment variable files
|
||||
.env
|
||||
.env.development.local
|
||||
.env.test.local
|
||||
.env.production.local
|
||||
.env.local
|
||||
|
||||
# parcel-bundler cache (https://parceljs.org/)
|
||||
.cache
|
||||
.parcel-cache
|
||||
|
||||
# Next.js build output
|
||||
.next
|
||||
out
|
||||
|
||||
# Nuxt.js build / generate output
|
||||
.nuxt
|
||||
dist
|
||||
|
||||
# Gatsby files
|
||||
.cache/
|
||||
# Comment in the public line in if your project uses Gatsby and not Next.js
|
||||
# https://nextjs.org/blog/next-9-1#public-directory-support
|
||||
# public
|
||||
|
||||
# vuepress build output
|
||||
.vuepress/dist
|
||||
|
||||
# vuepress v2.x temp and cache directory
|
||||
.temp
|
||||
.cache
|
||||
|
||||
# Docusaurus cache and generated files
|
||||
.docusaurus
|
||||
|
||||
# Serverless directories
|
||||
.serverless/
|
||||
|
||||
# FuseBox cache
|
||||
.fusebox/
|
||||
|
||||
# DynamoDB Local files
|
||||
.dynamodb/
|
||||
|
||||
# TernJS port file
|
||||
.tern-port
|
||||
|
||||
# Stores VSCode versions used for testing VSCode extensions
|
||||
.vscode-test
|
||||
|
||||
# yarn v2
|
||||
.yarn/cache
|
||||
.yarn/unplugged
|
||||
.yarn/build-state.yml
|
||||
.yarn/install-state.gz
|
||||
.pnp.*
|
||||
|
||||
### FontAwesome gitignore ###
|
||||
|
||||
fontawesome-pro-6.3.0-web
|
||||
|
||||
### direnv gitignore ###
|
||||
.direnv
|
||||
|
||||
### Nix Flake gitignore ###
|
||||
result
|
||||
|
||||
### MacOS gitignore ###
|
||||
# General
|
||||
.DS_Store
|
||||
.AppleDouble
|
||||
.LSOverride
|
||||
|
||||
# Icon must end with two \r
|
||||
Icon
|
||||
|
||||
# Thumbnails
|
||||
._*
|
||||
|
||||
# Files that might appear in the root of a volume
|
||||
.DocumentRevisions-V100
|
||||
.fseventsd
|
||||
.Spotlight-V100
|
||||
.TemporaryItems
|
||||
.Trashes
|
||||
.VolumeIcon.icns
|
||||
.com.apple.timemachine.donotpresent
|
||||
|
||||
# Directories potentially created on remote AFP share
|
||||
.AppleDB
|
||||
.AppleDesktop
|
||||
Network Trash Folder
|
||||
Temporary Items
|
||||
.apdisk
|
||||
1
.husky/.gitignore
vendored
|
|
@ -1 +0,0 @@
|
|||
_
|
||||
|
|
@ -1,4 +0,0 @@
|
|||
#!/bin/sh
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||||
. "$(dirname "$0")/_/husky.sh"
|
||||
|
||||
npx lint-staged
|
||||
0
.nojekyll
Normal file
|
|
@ -1 +0,0 @@
|
|||
layouts/_default/index.manifest.json
|
||||
|
|
@ -1,9 +0,0 @@
|
|||
"$schema": "http://json.schemastore.org/prettierrc"
|
||||
proseWrap: always
|
||||
overrides:
|
||||
- files: "*.html"
|
||||
options:
|
||||
parser: "go-template"
|
||||
- files: "*.gotmpl"
|
||||
options:
|
||||
parser: "go-template"
|
||||
3
.vscode/settings.json
vendored
|
|
@ -1,3 +0,0 @@
|
|||
{
|
||||
"editor.formatOnSave": true
|
||||
}
|
||||
|
|
@ -1,18 +0,0 @@
|
|||
when:
|
||||
branch: master
|
||||
event:
|
||||
- push
|
||||
- cron
|
||||
cron: "weekly-build"
|
||||
|
||||
steps:
|
||||
- name: Build site
|
||||
image: hugomods/hugo:std-base-non-root-0.141.0
|
||||
commands:
|
||||
- hugo --minify
|
||||
- name: Deploy to pages
|
||||
image: codeberg.org/xfix/plugin-codeberg-pages-deploy:1
|
||||
settings:
|
||||
folder: public
|
||||
ssh_key:
|
||||
from_secret: ssh_key
|
||||
|
|
@ -1,13 +0,0 @@
|
|||
{
|
||||
"languages": {
|
||||
"HTML": {
|
||||
"formatter": {
|
||||
"external": {
|
||||
"command": "prettier",
|
||||
"arguments": ["--stdin-filepath", "{buffer_path}"]
|
||||
}
|
||||
}
|
||||
}
|
||||
},
|
||||
"file_types": { "HTML": ["gotmpl"] }
|
||||
}
|
||||
1
CNAME
Normal file
|
|
@ -0,0 +1 @@
|
|||
millironx.com
|
||||
21
LICENSE
|
|
@ -1,21 +0,0 @@
|
|||
MIT License
|
||||
|
||||
Copyright (c) 2021 Thomas A. Christensen II
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
42
README.md
|
|
@ -1,42 +0,0 @@
|
|||
# pages
|
||||
|
||||
[](https://woodpecker.millironx.com/repos/30/branches/master)
|
||||
|
||||
My personal website. Hosted over at <https://millironx.com>
|
||||
|
||||
## Notes to self
|
||||
|
||||
### Nix dev shell
|
||||
|
||||
All developer dependencies are now bundled as a Nix Flake. The only trouble with
|
||||
this is that npm packages don't play well with Nix (and especially Flakes), so
|
||||
npm packages are specified twice: once in `package{-lock}.json` and then again
|
||||
in `node*.nix`.
|
||||
|
||||
Compounding this, there are formatters and commit hooks that require npm to be
|
||||
functional. So, to develop right now requires allowing direnv to setup the Nix
|
||||
development shell, then immediately installing npm packages via `npm ci`. VSCode
|
||||
(with extensions) and Zed are smart enough to figure out how to use direnv, and
|
||||
direnv will pass the PATH to SourceGit for Mac, but other programs aren't that
|
||||
smart, so you'll need to launch those programs from inside a direnv shell to
|
||||
make sure they have Prettier, Husky, and all that jazz to execute the hooks.
|
||||
|
||||
Last compounding factors: if `node_modules` is present in the root directory,
|
||||
then node2nix won't create a correct derivation, so `node_modules` will need to
|
||||
be temporarily deleted after modifying any npm packages, then as soon as
|
||||
node2nix is happy, then immediately run `npm ci` to get the commit hooks working
|
||||
again. Oh, and also, I renamed the `default.nix` file generated by node2nix to
|
||||
node.nix to avoid giving direnv any wrong impressions about what derivation to
|
||||
run.
|
||||
|
||||
Yes, hopefully I can get completely away from npm here soon, but this is a minor
|
||||
inconvenience considering how (not) often I install new packages into this site,
|
||||
and really discourages me from contributing to the website obesity crisis.
|
||||
|
||||
### Nix building
|
||||
|
||||
Nix building will not work because Hugo reaches out to the internet via content
|
||||
adapters, and that (by intention) is not perfectly reproducable. As such,
|
||||
_development_ tools are installed in a Nix shell, but building has been removed
|
||||
from the Flake. Thankfully, hugomods provides "canonical" Docker images for hugo
|
||||
now.
|
||||
24
academia/cheme-car/index.html
Normal file
|
|
@ -0,0 +1,24 @@
|
|||
<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
|
||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
 
|
||||
<span class="font-small-caps font-serif">Milliron X</span></a>
|
||||
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
|
||||
<span>Home</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/contact><i class="fad fa-file-signature fa-fw"></i>
|
||||
<span>Contact</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/academia><i class="fad fa-university fa-fw"></i>
|
||||
<span>Academia</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/ai><i class="fax fa-bull-sperm"></i>
|
||||
<span>Artificial Insemination</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/videos><i class="fad fa-video fa-fw"></i>
|
||||
<span>Videos</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/websites><i class="fad fa-browser fa-fw"></i>
|
||||
<span>Websites</span></a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=https://millironx.com/graphics/millironx.svg>
|
||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
  Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>University of Wyoming Honors Program: Laramie, Wyoming</h5><h2>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li></ul></small></h3><h4>May 14, 2019</h4><p>The ChemE Car That Cud showcases Wyoming’s dominant industries of agriculture
|
||||
and mining by utilizing rumen fluid from a cannulated beef cow to generate
|
||||
hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct
|
||||
of uranium that is often obtained from Wyoming’s mines, to time the car’s stop.
|
||||
The concentration of cesium-137 source is measured using the radioactive decay
|
||||
of cesium shielded by aluminum. The painted aluminum chassis was obtained from a
|
||||
previous team at UW, and modified using plastic k’nex toys to adapt to the
|
||||
current power source and stopping mechanism.</p><div class="card border-dark m-3 p-3"><a href=/academia/cheme-car/cud_cheme_car_web.pdf>/academia/cheme-car/cud_cheme_car_web.pdf</a>
|
||||
<iframe src=/academia/cheme-car/cud_cheme_car_web.pdf style=width:100%;height:75vh></iframe></div></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
|
||||
<script src=https://millironx.com/js/jquery-bundle.f8bd6be8ade6b0774e51ae4700c57d9c13a10e1f98eedf2ce691b44557dff6fb.js></script>
|
||||
<script src=https://millironx.com/js/bootstrap-bundle.f20a621e16ac8628aee1b6b222475038648c97869402e7933ac0bc243d28bc89.js></script>
|
||||
<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script></body></html>
|
||||
16
academia/how-to-build-a-cow-cud-fuel-cell/index.html
Normal file
|
|
@ -0,0 +1,16 @@
|
|||
<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>How to Build a Cow-Cud Fuel Cell - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
|
||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
 
|
||||
<span class="font-small-caps font-serif">Milliron X</span></a>
|
||||
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
|
||||
<span>Home</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/contact><i class="fad fa-file-signature fa-fw"></i>
|
||||
<span>Contact</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/academia><i class="fad fa-university fa-fw"></i>
|
||||
<span>Academia</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/ai><i class="fax fa-bull-sperm"></i>
|
||||
<span>Artificial Insemination</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/videos><i class="fad fa-video fa-fw"></i>
|
||||
<span>Videos</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/websites><i class="fad fa-browser fa-fw"></i>
|
||||
<span>Websites</span></a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=https://millironx.com/graphics/millironx.svg>
|
||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
  Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Idaho INBRE Summer Research Conference: Moscow, Idaho</h5><h2>How to Build a Cow-Cud Fuel Cell</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li></ul></small></h3><h4>August 1, 2018</h4></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
|
||||
<script src=https://millironx.com/js/jquery-bundle.f8bd6be8ade6b0774e51ae4700c57d9c13a10e1f98eedf2ce691b44557dff6fb.js></script>
|
||||
<script src=https://millironx.com/js/bootstrap-bundle.f20a621e16ac8628aee1b6b222475038648c97869402e7933ac0bc243d28bc89.js></script>
|
||||
<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script></body></html>
|
||||
17
academia/hydronium-pva/index.html
Normal file
|
|
@ -0,0 +1,17 @@
|
|||
<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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  Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>ACS ES&T Engineering</h5><h2>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h2><h3><small><ul class=list-inline><li class=list-inline-item>Carson J. Silsby</li><li class=list-inline-item>Jonathan R. Counts</li><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Mark F. Roll</li><li class=list-inline-item>Kristopher V. Waynant</li><li class=list-inline-item>James G. Moberly</li></ul></small></h3><h4>September 2, 2022</h4><p>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured. Variations in hydrogel crosslinking conditions, polymer composition, and solvent ionic strength were investigated to understand how each influenced hydronium ion diffusivity. A three-way ANOVA indicated that the ionic strength, membrane type, and crosslinking method significantly (<em>p</em> < 0.001) contributed to changes in hydronium ion mass transfer. Hydronium ion diffusion increased with ionic strength, counter to what is observed in aqueous-only (no polymer) solutions. Co-occurring mechanisms correlated to increased hydronium ion diffusion with ionic strength included an increased water fraction within hydrogel matrices and hydrogel contraction. Measured diffusion rates determined in this study provide first principal design information to further optimize encapsulating hydrogels for bioremediation.</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1021/acsestengg.2c00107>https://doi.org/10.1021/acsestengg.2c00107</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Academic Publications and Presentations - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
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  Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Publications and Presentations</h1></div><div class=img-src style=background-image:url(/images/library.jpg)></div><div class="img-src blur" style=background-image:url(/images/library_hu6756e41dd5621a1e254550fbe815c3a2_204150_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><h2>Selected Presentations</h2><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-book" data-bs-toggle=tooltip title=Paper></i></h3><a class="btn btn-secondary dogear" href=https://doi.org/10.1016/j.vetmic.2022.109447 data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/rotavirus-virome/>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</a></h3>Tyler Doerksen,
|
||||
<strong>Thomas A. Christensen II</strong>,
|
||||
Andrea Lu,
|
||||
Lance Noll,
|
||||
Jianfa Bai,
|
||||
Jamie Henningson,
|
||||
Rachel Palinski<br>Veterinary Microbiology:
|
||||
(27 Apr 2022)<br>Keywords:
|
||||
<a href=#>porcine rotavirus</a>
|
||||
<a href=#>porcine enteric disease</a>
|
||||
<a href=#>virome</a>
|
||||
<a href=#>rotavirus</a><br><details><summary>Abstract</summary><p>Enteric disease is the predominant cause of morbidity and mortality in young
|
||||
mammals including pigs. Viral species involved in porcine enteric disease
|
||||
complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses
|
||||
and pestiviruses among others. The virome of three groups of swine samples
|
||||
submitted to the Kansas State University Veterinary Diagnostic Laboratory for
|
||||
routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a
|
||||
Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group. All
|
||||
groups were designated by qRT-PCR results testing for Porcine Rotavirus A, B, C
|
||||
and H such that samples positive for RVA only went in the RVA group, samples
|
||||
positive for >1 rotavirus went in the RV group and samples negative for all were
|
||||
grouped in the RVNeg group. All of the animals had clinical enteric disease
|
||||
resulting in scours and swollen joints/lameness, enlarged heart and/or a cough.
|
||||
All samples were metagenomic sequenced and analyzed for viral species
|
||||
composition that identified 14 viral species and eight bacterial viruses/phages.
|
||||
Sapovirus and Escherichia coli phages were found at a high prevalence in RVA and
|
||||
RV samples but were found at low or no prevalence in the RV Neg samples.
|
||||
Picobirnavirus was identified at a high proportion and prevalence in RV Neg and
|
||||
RV samples but at a low prevalence in the RVA group. A sequence analysis of the
|
||||
possible host of Picobirnaviruses revealed fungi as the most likely host.
|
||||
Non-rotaviral diversity was highest in RVA samples followed by RV then RV Neg
|
||||
samples. Various sequences were extracted from the sample reads and a
|
||||
phylogenetic update was provided showing a high prevalence of G9 and P[23] RVA
|
||||
genotypes. These data are important for pathogen surveillance and control
|
||||
measures</p></details></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-graduation-cap" data-bs-toggle=tooltip title=Thesis></i></h3><a class="btn btn-secondary dogear" href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2 data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/thesis/>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</a></h3><strong>Thomas A. Christensen II</strong><br>University of Idaho:
|
||||
Moscow, Idaho
|
||||
(07 Aug 2020)<br>Keywords:
|
||||
<a href=#>bioremediation</a>
|
||||
<a href=#>polyoxometalate</a>
|
||||
<a href=#>hydrogel polymers</a>
|
||||
<a href=#>proton transport</a>
|
||||
<a href=#>chemical engineering</a><br><details><summary>Abstract</summary><p>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve
|
||||
the challenges posed by free proton generation during remediation of
|
||||
trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In
|
||||
this thesis, the challenges posed by systems that contain both diffusion and
|
||||
reaction processes for protons are considered mathematically, and a computer
|
||||
simulation to was developed to prove the relationship between diaphragm cell lag
|
||||
period and reactive capabilities of membranes. Two polyoxometalate compounds,
|
||||
sodium decavanadate and alumina sulfate, were successfully incorporated into a
|
||||
poly(vinyl alcohol) hydrogel membrane, and the diffusivity changes associated
|
||||
with each compound was determined. It was found that the diffusivity of protons
|
||||
through an unmodified 10% w/v poly(vinyl alcohol) membrane was 1.76 ×
|
||||
10<sup>-5</sup>
|
||||
cm<sup>2</sup>
|
||||
s<sup>-1</sup>
|
||||
, the diffusivity through a
|
||||
10%/2% w/w/v poly(vinyl alcohol)/sodium decavanadate membrane was 3.10 ×
|
||||
10<sup>-6</sup>
|
||||
cm<sup>2</sup>
|
||||
s<sup>-1</sup>
|
||||
, and the diffusivity through a
|
||||
10%/2% w/w/v poly(vinyl alcohol)/alumina sulfate membrane was 3.32 ×
|
||||
10<sup>-7</sup>
|
||||
cm<sup>2</sup>
|
||||
s<sup>-1</sup>
|
||||
. Through analysis of the
|
||||
diaphragm cell lag period, it was found the incorporation of sodium decavanadate
|
||||
did not increase the reactivity of a poly(vinyl alcohol) hydrogel, and
|
||||
incorporation of alumina sulfate lowered the reactivity. These results indicate
|
||||
that polyoxometalate integration into hydrogel membranes is feasible, but does
|
||||
not provide any advantage to a bioremediation scenario.</p></details></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-presentation" data-bs-toggle=tooltip title=Poster></i></h3><a class="btn btn-secondary dogear" href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/metagenomics/>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</a></h3><strong>Thomas A. Christensen II</strong>,
|
||||
Kathy J. Austin,
|
||||
Kristi M. Cammack,
|
||||
Hannah C. Cunningham-Hollinger<br>Westion Section American Society of Animal Science Annual Meeting:
|
||||
Boise, Idaho
|
||||
(12 Jun 2019)<br>Keywords:
|
||||
<a href=#>gestation</a>
|
||||
<a href=#>metagenomics</a>
|
||||
<a href=#>microbiome</a>
|
||||
<a href=#>rumen</a><br><details><summary>Abstract</summary><p>Early colonization of the rumen microbiome is critical to host health and long
|
||||
term performance. Factors that influence early colonization include maternal
|
||||
factors such as gestational nutrition and mode of delivery. Therefore, we
|
||||
hypothesized that late gestational nutrition and mode of delivery would
|
||||
influence the calf rumen microbiome. Our objectives were to determine if
|
||||
nutrient restriction during late gestation alters the calf rumen microbiome and
|
||||
determine if ruminal microbiome composition differs in calves born vaginally
|
||||
versus caesarean. Late gestating Angus cows were randomly allocated to one of
|
||||
three treatment groups: control (<strong>CON</strong>; n = 6), caesarean section (<strong>CS</strong>; n =
|
||||
4), and nutrient restricted (<strong>NR</strong>; n = 5), where CON were fed DDGS and hay to
|
||||
meet NRC requirements and calved naturally; CS were fed similarly to CON and
|
||||
calves were born via caesarean section; and NR were fed at a level to reduce BCS
|
||||
by 1.5-2.0 points over the last trimester compared to CON and calved naturally.
|
||||
Rumen fluid was collected via oral lavage prior to partition from cows and at d
|
||||
7 from calves. Microbial DNA was isolated from the rumen fluid and metagenomic
|
||||
shotgun sequencing was performed using the Illumina HiSeq 2500 platform.
|
||||
Sequence data were analyzed using Metaxa2 for taxonomic assignment followed by
|
||||
QIIME1 and QIIME2 to determine differential abundance and alpha- and
|
||||
beta-diversity differences. There were no significant differences in
|
||||
alpha-diversity as measured by shannon index across treatment groups for cows
|
||||
(<em>P</em> = 0.239), but there were significant differences for calves (<em>P</em> = 0.015).
|
||||
Similarly, there were no significant differences in beta-diversity as measured
|
||||
by the bray-curtis dissimilarity matrix for cows (<em>P</em> = 0.059), but there were
|
||||
significant differences for calves (<em>P</em> = 0.007). Alpha-diversity differed (<em>P</em>
|
||||
< 0.001) between cows and calves, with cows having increased species richness
|
||||
compared to calves. Beta-diversity also differed (<em>P</em> = 0.001) between cows and
|
||||
calves. At total of 410 taxa were differentially abundant (<em>P</em> < 0.01) between
|
||||
cows and calves. These results suggest that the mature rumen microbiome of cows
|
||||
is able to withstand changes in feed intake, however the calf microbiome is
|
||||
susceptible to alteration by maternal factors. These data also suggest that
|
||||
there may be opportunities to develop management strategies during late
|
||||
gestation that influence calf health and performance long-term.</p></details></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-graduation-cap" data-bs-toggle=tooltip title=Thesis></i></h3><a class="btn btn-secondary dogear" href=/academia/cheme-car/cud_cheme_car_web.pdf data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/cheme-car/>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</a></h3><strong>Thomas A. Christensen II</strong><br>University of Wyoming Honors Program:
|
||||
Laramie, Wyoming
|
||||
(14 May 2019)<br>Keywords:
|
||||
<a href=#>chemical engineering</a>
|
||||
<a href=#>AIChE</a>
|
||||
<a href=#>radiation</a>
|
||||
<a href=#>rumen</a>
|
||||
<a href=#>microbial electrolysis cells</a><br><details><summary>Abstract</summary><p>The ChemE Car That Cud showcases Wyoming’s dominant industries of agriculture
|
||||
and mining by utilizing rumen fluid from a cannulated beef cow to generate
|
||||
hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct
|
||||
of uranium that is often obtained from Wyoming’s mines, to time the car’s stop.
|
||||
The concentration of cesium-137 source is measured using the radioactive decay
|
||||
of cesium shielded by aluminum. The painted aluminum chassis was obtained from a
|
||||
previous team at UW, and modified using plastic k’nex toys to adapt to the
|
||||
current power source and stopping mechanism.</p></details></div></div><hr><h2>Other Presentations</h2><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-book" data-bs-toggle=tooltip title=Paper></i></h3><a class="btn btn-secondary dogear" href=https://doi.org/10.1021/acsestengg.2c00107 data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/hydronium-pva/>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</a></h3>Carson J. Silsby,
|
||||
Jonathan R. Counts,
|
||||
<strong>Thomas A. Christensen II</strong>,
|
||||
Mark F. Roll,
|
||||
Kristopher V. Waynant,
|
||||
James G. Moberly<br>ACS ES&T Engineering:
|
||||
(02 Sep 2022)<br>Keywords:
|
||||
<a href=#>diffusion</a>
|
||||
<a href=#>hydrogels</a>
|
||||
<a href=#>ionic strength</a>
|
||||
<a href=#>polymers</a>
|
||||
<a href=#>transport properties</a><br></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-presentation" data-bs-toggle=tooltip title=Poster></i></h3><a class="btn btn-secondary dogear" href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/pva-aiche/>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</a></h3><strong>Thomas A. Christensen II</strong>,
|
||||
Samuel R. Wolfe,
|
||||
Jonathan Counts,
|
||||
Mark F. Roll,
|
||||
Kristopher V. Waynant,
|
||||
James G. Moberly<br>AIChE Annual Meeting:
|
||||
Pittsburgh, Pennsylvania
|
||||
(29 Oct 2018)<br>Keywords:
|
||||
<a href=#>bioremediation</a>
|
||||
<a href=#>polyoxometalate</a>
|
||||
<a href=#>hydrogel polymers</a>
|
||||
<a href=#>proton transport</a>
|
||||
<a href=#>chemical engineering</a><br></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-podium" data-bs-toggle=tooltip title=Presentation></i></h3></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/how-to-build-a-cow-cud-fuel-cell/>How to Build a Cow-Cud Fuel Cell</a></h3><strong>Thomas A. Christensen II</strong><br>Idaho INBRE Summer Research Conference:
|
||||
Moscow, Idaho
|
||||
(01 Aug 2018)<br></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-presentation" data-bs-toggle=tooltip title=Poster></i></h3></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/pva-inbre/>Measuring diffusion of protons in polyvinyalginate</a></h3><strong>Thomas A. Christensen II</strong>,
|
||||
Jonathan Counts,
|
||||
James G. Moberly<br>Idaho INBRE Summer Research Conference:
|
||||
Moscow, Idaho
|
||||
(31 Jul 2018)<br></div></div></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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1
academia/index.xml
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48
academia/metagenomics/index.html
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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  Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Westion Section American Society of Animal Science Annual Meeting: Boise, Idaho</h5><h2>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Kathy J. Austin</li><li class=list-inline-item>Kristi M. Cammack</li><li class=list-inline-item>Hannah C. Cunningham-Hollinger</li></ul></small></h3><h4>June 12, 2019</h4><p>Early colonization of the rumen microbiome is critical to host health and long
|
||||
term performance. Factors that influence early colonization include maternal
|
||||
factors such as gestational nutrition and mode of delivery. Therefore, we
|
||||
hypothesized that late gestational nutrition and mode of delivery would
|
||||
influence the calf rumen microbiome. Our objectives were to determine if
|
||||
nutrient restriction during late gestation alters the calf rumen microbiome and
|
||||
determine if ruminal microbiome composition differs in calves born vaginally
|
||||
versus caesarean. Late gestating Angus cows were randomly allocated to one of
|
||||
three treatment groups: control (<strong>CON</strong>; n = 6), caesarean section (<strong>CS</strong>; n =
|
||||
4), and nutrient restricted (<strong>NR</strong>; n = 5), where CON were fed DDGS and hay to
|
||||
meet NRC requirements and calved naturally; CS were fed similarly to CON and
|
||||
calves were born via caesarean section; and NR were fed at a level to reduce BCS
|
||||
by 1.5-2.0 points over the last trimester compared to CON and calved naturally.
|
||||
Rumen fluid was collected via oral lavage prior to partition from cows and at d
|
||||
7 from calves. Microbial DNA was isolated from the rumen fluid and metagenomic
|
||||
shotgun sequencing was performed using the Illumina HiSeq 2500 platform.
|
||||
Sequence data were analyzed using Metaxa2 for taxonomic assignment followed by
|
||||
QIIME1 and QIIME2 to determine differential abundance and alpha- and
|
||||
beta-diversity differences. There were no significant differences in
|
||||
alpha-diversity as measured by shannon index across treatment groups for cows
|
||||
(<em>P</em> = 0.239), but there were significant differences for calves (<em>P</em> = 0.015).
|
||||
Similarly, there were no significant differences in beta-diversity as measured
|
||||
by the bray-curtis dissimilarity matrix for cows (<em>P</em> = 0.059), but there were
|
||||
significant differences for calves (<em>P</em> = 0.007). Alpha-diversity differed (<em>P</em>
|
||||
< 0.001) between cows and calves, with cows having increased species richness
|
||||
compared to calves. Beta-diversity also differed (<em>P</em> = 0.001) between cows and
|
||||
calves. At total of 410 taxa were differentially abundant (<em>P</em> < 0.01) between
|
||||
cows and calves. These results suggest that the mature rumen microbiome of cows
|
||||
is able to withstand changes in feed intake, however the calf microbiome is
|
||||
susceptible to alteration by maternal factors. These data also suggest that
|
||||
there may be opportunities to develop management strategies during late
|
||||
gestation that influence calf health and performance long-term.</p><div class="card border-dark m-3 p-3"><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf</a>
|
||||
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34
academia/pva-aiche/index.html
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|
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
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|
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<span class="font-small-caps font-serif">Milliron X</span></a>
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|
||||
  Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>AIChE Annual Meeting: Pittsburgh, Pennsylvania</h5><h2>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Samuel R. Wolfe</li><li class=list-inline-item>Jonathan Counts</li><li class=list-inline-item>Mark F. Roll</li><li class=list-inline-item>Kristopher V. Waynant</li><li class=list-inline-item>James G. Moberly</li></ul></small></h3><h4>October 29, 2018</h4><p>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique
|
||||
challenges for cleanup because of its water solubility, density, and volatility.
|
||||
Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE
|
||||
results in acid generation that inhibits remediating microorganisms. Calcium
|
||||
alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting
|
||||
remediating microbes, however diffusion of TCE or its byproducts through these
|
||||
polymers is unknown. To measure the effective diffusion coefficient of TCE and
|
||||
byproducts through hydrogel membranes, we used a modified diaphragm cell.
|
||||
Measured effective diffusion coefficient of each species was (cm <sup>2</sup>
|
||||
/s
|
||||
× 10<sup>6</sup>
|
||||
): 14.0 ± 1.91 for H<sup>+</sup>
|
||||
ions, 12.4 ± 1.64 for TCE,
|
||||
7.83 ± 0.54 for cis-1,2-dichloroethylene (DCE), and 4.68 ± 4.14 for vinyl
|
||||
chloride. These results aid in engineering biobeads and suggest that CA-PVA
|
||||
hydrogel blends are effective in slowing diffusion of protons, buffering acids
|
||||
produced by trichloroethylene metabolism, and remains suitable for encapsulation
|
||||
of microorganisms involved in bioremediation.</p><div class="card border-dark m-3 p-3"><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf</a>
|
||||
<iframe src=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf style=width:100%;height:75vh></iframe></div></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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36
academia/pva-inbre/index.html
Normal file
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|
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|
|||
<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Measuring diffusion of protons in polyvinyalginate - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
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|
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<span class="font-small-caps font-serif">Milliron X</span></a>
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<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
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<span>Websites</span></a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=https://millironx.com/graphics/millironx.svg>
|
||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
  Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Idaho INBRE Summer Research Conference: Moscow, Idaho</h5><h2>Measuring diffusion of protons in polyvinyalginate</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Jonathan Counts</li><li class=list-inline-item>James G. Moberly</li></ul></small></h3><h4>July 31, 2018</h4><p>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents
|
||||
unique challenges for cleanup because of its density and volatility. Use of
|
||||
microorganisms may be a promising remediation method, however metabolism of TCE
|
||||
results in acid buildup, which consequently impedes the ability of
|
||||
microorganisms to perform this remediation. Polyvinylalginate (PVA) shows
|
||||
promise as a useful shield for microorganisms carrying out bioremediation of TCE
|
||||
by surrounding them in a protective biofilm-like layer, however, key information
|
||||
is missing which relates diffusion of TCE or its metabolic products through PVA.
|
||||
To measure the effective diffusion coefficient of H<sup>+</sup>
|
||||
ions through
|
||||
a PVA membrane cross-linked with boric acid and calcium ions, we used a modified
|
||||
diaphragm cell. We found the effective diffusion coefficient to be 1.40 ×
|
||||
10<sup>-5</sup>
|
||||
± 1.91 × 10<sup>-6</sup>
|
||||
cm<sup>2</sup>
|
||||
s, a nearly
|
||||
seven-fold decrease in diffusivity compared to protons in water, with an
|
||||
unexpected significant but as of yet unquantified adsorption capacity. These
|
||||
results suggest that polyvinylalginate is effective in slowing diffusion of
|
||||
protons and buffering these acids produced by trichloroethylene metabolism, and
|
||||
remains suitable for encapsulation of microorganisms involved in bioremediation.</p></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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||||
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|
||||
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|
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40
academia/rotavirus-virome/index.html
Normal file
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|
@ -0,0 +1,40 @@
|
|||
<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
|
||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
 
|
||||
<span class="font-small-caps font-serif">Milliron X</span></a>
|
||||
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
|
||||
<span>Home</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/contact><i class="fad fa-file-signature fa-fw"></i>
|
||||
<span>Contact</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/academia><i class="fad fa-university fa-fw"></i>
|
||||
<span>Academia</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/ai><i class="fax fa-bull-sperm"></i>
|
||||
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|
||||
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|
||||
<span>Websites</span></a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=https://millironx.com/graphics/millironx.svg>
|
||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
  Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Veterinary Microbiology</h5><h2>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h2><h3><small><ul class=list-inline><li class=list-inline-item>Tyler Doerksen</li><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Andrea Lu</li><li class=list-inline-item>Lance Noll</li><li class=list-inline-item>Jianfa Bai</li><li class=list-inline-item>Jamie Henningson</li><li class=list-inline-item>Rachel Palinski</li></ul></small></h3><h4>April 27, 2022</h4><p>Enteric disease is the predominant cause of morbidity and mortality in young
|
||||
mammals including pigs. Viral species involved in porcine enteric disease
|
||||
complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses
|
||||
and pestiviruses among others. The virome of three groups of swine samples
|
||||
submitted to the Kansas State University Veterinary Diagnostic Laboratory for
|
||||
routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a
|
||||
Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group. All
|
||||
groups were designated by qRT-PCR results testing for Porcine Rotavirus A, B, C
|
||||
and H such that samples positive for RVA only went in the RVA group, samples
|
||||
positive for >1 rotavirus went in the RV group and samples negative for all were
|
||||
grouped in the RVNeg group. All of the animals had clinical enteric disease
|
||||
resulting in scours and swollen joints/lameness, enlarged heart and/or a cough.
|
||||
All samples were metagenomic sequenced and analyzed for viral species
|
||||
composition that identified 14 viral species and eight bacterial viruses/phages.
|
||||
Sapovirus and Escherichia coli phages were found at a high prevalence in RVA and
|
||||
RV samples but were found at low or no prevalence in the RV Neg samples.
|
||||
Picobirnavirus was identified at a high proportion and prevalence in RV Neg and
|
||||
RV samples but at a low prevalence in the RVA group. A sequence analysis of the
|
||||
possible host of Picobirnaviruses revealed fungi as the most likely host.
|
||||
Non-rotaviral diversity was highest in RVA samples followed by RV then RV Neg
|
||||
samples. Various sequences were extracted from the sample reads and a
|
||||
phylogenetic update was provided showing a high prevalence of G9 and P[23] RVA
|
||||
genotypes. These data are important for pathogen surveillance and control
|
||||
measures</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1016/j.vetmic.2022.109447>https://doi.org/10.1016/j.vetmic.2022.109447</a>
|
||||
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|
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academia/thesis/index.html
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|
|
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|
|||
<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
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<span class="font-small-caps font-serif">Milliron X</span></a>
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<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
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<span>Home</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/contact><i class="fad fa-file-signature fa-fw"></i>
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||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
  Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>University of Idaho: Moscow, Idaho</h5><h2>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li></ul></small></h3><h4>August 7, 2020</h4><p>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve
|
||||
the challenges posed by free proton generation during remediation of
|
||||
trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In
|
||||
this thesis, the challenges posed by systems that contain both diffusion and
|
||||
reaction processes for protons are considered mathematically, and a computer
|
||||
simulation to was developed to prove the relationship between diaphragm cell lag
|
||||
period and reactive capabilities of membranes. Two polyoxometalate compounds,
|
||||
sodium decavanadate and alumina sulfate, were successfully incorporated into a
|
||||
poly(vinyl alcohol) hydrogel membrane, and the diffusivity changes associated
|
||||
with each compound was determined. It was found that the diffusivity of protons
|
||||
through an unmodified 10% w/v poly(vinyl alcohol) membrane was 1.76 ×
|
||||
10<sup>-5</sup>
|
||||
cm<sup>2</sup>
|
||||
s<sup>-1</sup>
|
||||
, the diffusivity through a
|
||||
10%/2% w/w/v poly(vinyl alcohol)/sodium decavanadate membrane was 3.10 ×
|
||||
10<sup>-6</sup>
|
||||
cm<sup>2</sup>
|
||||
s<sup>-1</sup>
|
||||
, and the diffusivity through a
|
||||
10%/2% w/w/v poly(vinyl alcohol)/alumina sulfate membrane was 3.32 ×
|
||||
10<sup>-7</sup>
|
||||
cm<sup>2</sup>
|
||||
s<sup>-1</sup>
|
||||
. Through analysis of the
|
||||
diaphragm cell lag period, it was found the incorporation of sodium decavanadate
|
||||
did not increase the reactivity of a poly(vinyl alcohol) hydrogel, and
|
||||
incorporation of alumina sulfate lowered the reactivity. These results indicate
|
||||
that polyoxometalate integration into hydrogel membranes is feasible, but does
|
||||
not provide any advantage to a bioremediation scenario.</p><div class="card border-dark m-3 p-3"><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2>https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2</a>
|
||||
<iframe src=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2 style=width:100%;height:75vh></iframe></div></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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||||
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|
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|
||||
21
ai/index.html
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|
|
@ -0,0 +1,21 @@
|
|||
<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Artificial Insemination - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
 
|
||||
<span class="font-small-caps font-serif">Milliron X</span></a>
|
||||
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
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<span>Home</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/contact><i class="fad fa-file-signature fa-fw"></i>
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<span>Contact</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/academia><i class="fad fa-university fa-fw"></i>
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<span>Academia</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/ai><i class="fax fa-bull-sperm"></i>
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<span>Artificial Insemination</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/videos><i class="fad fa-video fa-fw"></i>
|
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<span>Videos</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/websites><i class="fad fa-browser fa-fw"></i>
|
||||
<span>Websites</span></a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=https://millironx.com/graphics/millironx.svg>
|
||||
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
|
||||
  Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Artificial Insemination</h1></div><div class=img-src style=background-image:url(/images/Ai-calf.jpg)></div><div class="img-src blur" style=background-image:url(/images/Ai-calf_hu1143faa57f5b1acd11a97eda612b56ee_469394_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><p>I am licensed in the Great State of Wyoming as a food animal artificial
|
||||
insemination technician, which means I can legally AI cows, goats, and sheep.
|
||||
Practically speaking, I have only ever AIed cows, but my conception rates are
|
||||
very good for both beef and dairy cows. When (if?) I standardize my rates, I
|
||||
will include them here. Until then, you will have to <a href=/contact>contact me</a>
|
||||
directly and we can negotiate prices then.</p></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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||||
<script src=https://millironx.com/js/jquery-bundle.f8bd6be8ade6b0774e51ae4700c57d9c13a10e1f98eedf2ce691b44557dff6fb.js></script>
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||||
<script src=https://millironx.com/js/bootstrap-bundle.f20a621e16ac8628aee1b6b222475038648c97869402e7933ac0bc243d28bc89.js></script>
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||||
<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script></body></html>
|
||||
1
ai/index.xml
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|
|
@ -0,0 +1 @@
|
|||
<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Artificial Insemination on MillironX</title><link>https://millironx.com/ai/</link><description>Recent content in Artificial Insemination on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><atom:link href="https://millironx.com/ai/index.xml" rel="self" type="application/rss+xml"/></channel></rss>
|
||||
|
|
@ -1,20 +0,0 @@
|
|||
---
|
||||
title: "{{ replace .Name "-" " " | title }}"
|
||||
date: {{ .Date }}
|
||||
cardImage: library
|
||||
draft: true
|
||||
featured: false
|
||||
tags:
|
||||
- smart
|
||||
- profound
|
||||
type: "Journal Article"
|
||||
authors:
|
||||
- Christensen, Thomas Allen, II
|
||||
link: 'https://dx.doi.org/...'
|
||||
journal: "Journal of Hard Knocks"
|
||||
location: "Life"
|
||||
awards:
|
||||
- 'Everything is Awesome 2020'
|
||||
---
|
||||
|
||||
Abstract goes here
|
||||
|
|
@ -1,30 +0,0 @@
|
|||
# Characters
|
||||
|
||||
Imaginary friends that help me inject personality into my articles. These are
|
||||
anthropomorphized versions of animals that I have known in real life. I tried to
|
||||
draw them roughly in the style of Chris Pasquini, but failed myself, then tried
|
||||
using Perplexity's image generation. The style isn't quite the same, but I like
|
||||
it for these animals. Also, Perplexity does a horrible job of labeling images,
|
||||
so ignore the ref sheet emotion labels.
|
||||
|
||||
## Spawn of Satan (aka Spawn aka SOS)
|
||||
|
||||

|
||||
|
||||
Spawn of Satan is the name Travis gave to the cannulated cow, and it stuck.
|
||||
Spawn is old and cynical after having every professor with a new idea experiment
|
||||
on her. After being in academia for so long, she knows her way around
|
||||
mathematics and the scientific method reasonably well, even if she's never
|
||||
formally taken a college course in the sciences. She is the realist to any blog
|
||||
post's optimist.
|
||||
|
||||
## Whelen
|
||||
|
||||

|
||||
|
||||
Whelen is a happy-go-lucky German Shepherd/Husky mix puppy. He's been to school
|
||||
once - and that was just to get neutered - so his knowledge of math and science,
|
||||
heck, even of the humanities, isn't very good. He is very naive and thinks
|
||||
everyone is nice and wants to be his friend, but he is also friendly to everyone
|
||||
and is very vocal when he feels left out. He will step in when any blog post is
|
||||
getting too technical and demand an explanation for real people (dogs?).
|
||||
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