editor: Use Prettier for formatting within Zed

Bumps [yaml](https://github.com/eemeli/yaml) from 2.2.1 to 2.2.2.
- [Release notes](https://github.com/eemeli/yaml/releases)
- [Commits](https://github.com/eemeli/yaml/compare/v2.2.1...v2.2.2)

---
updated-dependencies:
- dependency-name: yaml
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>

.envrc

@@ -0,0 +1,2 @@
+use nix
+layout node

.github/workflows/build-site.yml

@@ -1,44 +0,0 @@
-name: Build and Deploy Site
-on:
-  push:
-    branches:
-      - master
-jobs:
-  build:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v2
-        with:
-          submodules: true
-      - name: Setup Node
-        uses: actions/setup-node@v2
-        with:
-          node-version: lts/*
-      - name: Setup Hugo
-        uses: peaceiris/actions-hugo@v2
-        with:
-          hugo-version: "latest"
-          extended: true
-      - name: Configure npm
-        run: |
-          npm config set "@fortawesome:registry" https://npm.fontawesome.com/
-          npm config set "//npm.fontawesome.com/:_authToken" ${{ secrets.FONTAWESOME_TOKEN }}
-      - name: Install postcss
-        run: |
-          npm -g install postcss-cli
-      - name: Install npm packages
-        run: |
-          npm install
-      - name: Run Hugo
-        run: |
-          hugo --environment production --minify
-      - name: Deploy to gh-pages
-        if: ${{ !env.ACT }}
-        uses: rdarida/simple-github-pages-deploy-action@v1
-        with:
-          git-user: "MillironX"
-          git-email: "25492070+MillironX@users.noreply.github.com"
-          git-base-folder: "public"
-          commit-message: "Build and deploy"
-          branch: "gh-pages"

.github/workflows/hugo.yml

@@ -0,0 +1,90 @@
+# Sample workflow for building and deploying a Hugo site to GitHub Pages
+name: Deploy Hugo site to Pages
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["master"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow one concurrent deployment
+concurrency:
+  group: "pages"
+  cancel-in-progress: true
+
+# Default to bash
+defaults:
+  run:
+    shell: bash
+
+jobs:
+  # Build job
+  build:
+    runs-on: ubuntu-latest
+    env:
+      HUGO_VERSION: 0.111.3
+      NODE_VERSION: 18.14.2
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+          fetch-depth: 0
+      - name: Install git-crypt
+        run: |
+          sudo apt-get install git-crypt -y
+      - name: Decrypt repository
+        run: |
+          echo "${{ secrets.GIT_CRYPT_KEY }}" \
+            | base64 --decode \
+            > ~/millironx.github.io.key
+          git-crypt unlock ~/millironx.github.io.key
+      - name: Install Node.js
+        uses: actions/setup-node@v3
+        with:
+          node-version: "${{ env.NODE_VERSION }}"
+      - name: Install Hugo CLI
+        uses: peaceiris/actions-hugo@v2
+        with:
+          hugo-version: "${{ env.HUGO_VERSION }}"
+          extended: true
+      - name: Setup Pages
+        id: pages
+        uses: actions/configure-pages@v2
+      - name: Install postcss cli
+        run: npm install -g postcss-cli
+      - name: Install Node.js dependencies
+        run: npm ci
+      - name: Build with Hugo
+        env:
+          # For maximum backward compatibility with Hugo modules
+          HUGO_ENVIRONMENT: production
+          HUGO_ENV: production
+        run: |
+          hugo \
+            --minify \
+            --baseURL "${{ steps.pages.outputs.base_url }}/"
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v1
+        with:
+          path: ./public
+
+  # Deployment job
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    needs: build
+    steps:
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v1

.gitignore

@@ -151,3 +151,7 @@ dist
 .yarn/build-state.yml
 .yarn/install-state.gz
 .pnp.*
+
+### FontAwesome gitignore ###
+
+fontawesome-pro-6.3.0-web

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "themes/ananke"]
-	path = themes/ananke
-	url = https://github.com/theNewDynamic/gohugo-theme-ananke.git

.gitpod.yml

@@ -1,12 +1,9 @@
 # List the start up tasks. Learn more https://www.gitpod.io/docs/config-start-tasks/
 tasks:
   - name: Install Hugo dependencies
-    before: |
+    before: brew install hugo
-      mkdir -p $HOME/.local/bin
-      curl -L https://github.com/gohugoio/hugo/releases/download/v0.104.3/hugo_extended_0.104.3_linux-amd64.tar.gz | tar xvz -C $HOME/.local/bin
-      export PATH=$HOME/.local/bin:$PATH
     init: echo "Your version of Hugo is `hugo version`"
-    command: hugo server -D -F --baseUrl $(gp url 1313) --liveReloadPort=443 --appendPort=false --bind=0.0.0.0
+    command: npm ci && hugo server -D -F --baseUrl $(gp url 1313) --liveReloadPort=443 --appendPort=false --bind=0.0.0.0
 # List the ports to expose. Learn more https://www.gitpod.io/docs/config-ports/
 ports:
   - port: 1313

.vscode/settings.json

@@ -0,0 +1,3 @@
+{
+  "editor.formatOnSave": true
+}

.woodpecker/build-site.yml

@@ -0,0 +1,21 @@
+when:
+  branch: "master"
+
+steps:
+  - name: Install Node packages
+    image: node:18.14.2-slim
+    commands:
+      - npm ci
+  - name: Build Hugo site
+    image: peaceiris/hugo:v0.111.3-full
+    environment:
+      HUGO_ENV: production
+      HUGO_ENVIRONMENT: production
+    commands:
+      - hugo --minify
+  - name: Deploy to pages
+    image: codeberg.org/xfix/plugin-codeberg-pages-deploy:1
+    settings:
+      folder: public
+      ssh_key:
+        from_secret: ssh_key

.zed/settings.json

@@ -0,0 +1,12 @@
+{
+  "languages": {
+    "HTML": {
+      "formatter": {
+        "external": {
+          "command": "prettier",
+          "arguments": ["--stdin-filepath", "{buffer_path}"]
+        }
+      }
+    }
+  }
+}

archetypes/academia.md

@@ -4,7 +4,7 @@ date: {{ .Date }}
 cardImage: library
 draft: true
 featured: false
-keywords:
+tags:
   - smart
   - profound
 type: "Journal Article"

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+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
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+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:cc="http://creativecommons.org/ns#"
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+     borderopacity="1"
+     objecttolerance="10"
+     gridtolerance="10"
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@@ -0,0 +1 @@
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assets/graphics/fa/spotify.svg

@@ -0,0 +1 @@
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assets/graphics/fa/stack-overflow.svg

@@ -0,0 +1 @@
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assets/graphics/fa/steam.svg

@@ -0,0 +1 @@
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assets/graphics/fa/tag.svg

@@ -0,0 +1 @@
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assets/graphics/fa/university.svg

@@ -0,0 +1 @@
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assets/graphics/fa/user-astronaut.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M370.7 96C346 39.5 289.6 0 224 0S102 39.5 77.3 96H48V224H77.3c24.7 56.5 81.1 96 146.7 96s122-39.5 146.7-96H400V96H370.7zM336 128v32c0 53-43 96-96 96H208c-53 0-96-43-96-96V128l32-32H304l32 32zM192 160l-16-32-16 32-32 16 32 16 16 32 16-32 32-16-32-16zM97 304H48L0 512H128V416H320v96H448L400 304H351c-33.8 29.9-78.3 48-127 48s-93.2-18.1-127-48zm95 144H160v16 48h32V464 448zm80 32a16 16 0 1 0 0-32 16 16 0 1 0 0 32z"/></svg>

assets/graphics/fa/user.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M224 256A128 128 0 1 0 224 0a128 128 0 1 0 0 256zM448 512L384 304H64L0 512H448z"/></svg>

assets/graphics/fa/video.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 576 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M384 64H0V448H384V64zM576 448V64L416 174.9V337.1L576 448z"/></svg>

assets/graphics/fa/vimeo.svg

@@ -0,0 +1 @@
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assets/graphics/fa/w.svg

@@ -0,0 +1 @@
+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 576 512"><!--! Font Awesome Pro 6.3.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license (Commercial License) Copyright 2023 Fonticons, Inc. --><path d="M505.8 32h67.6L429.3 458.2 422 480H375l-6.7-23L287 178.3 205.7 457 199 480H152l-7.4-21.8L.6 32H68.2L172.8 341.4 256.3 55 263 32h48l6.7 23 83.5 286.4L505.8 32z"/></svg>

assets/graphics/fa/zotero.svg

@@ -0,0 +1,3 @@
+<svg xmlns="http://www.w3.org/2000/svg" width="1536" height="1792" viewBox="0 0 1536 1792">
+    <path d="M662.716 1663.44l667.946-310.051V428.98L662.714 128.5.508 428.98v924.408zm-348.331-279.43v-202.24l24.881-96.325 352.155-378.95H314.385V492.137l59.332-82.295h600.96l62.842 78.47v218.181l-338.44 378.95h275.6l62.841 77.188v221.379z" fill-rule="evenodd" stroke-width="14.41"/>
+</svg>

assets/graphics/millironx.svg

@@ -7,102 +7,37 @@
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:svg="http://www.w3.org/2000/svg"
    xmlns="http://www.w3.org/2000/svg"
-   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
-   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
    width="29.935179mm"
    height="8.7677584mm"
    viewBox="0 0 106.06953 31.06686"
    id="svg2"
-   version="1.1"
+   version="1.1">
-   inkscape:version="0.92.4 (5da689c313, 2019-01-14)"
+   <defs
-   sodipodi:docname="MillironX-title.svg">
+      id="defs4">
-  <defs
+      <style>
-     id="defs4">
+         svg {
-    <inkscape:path-effect
+         background-color: transparent;
-       effect="spiro"
+         color-scheme: light dark;
-       id="path-effect4154"
+         }
-       is_visible="true" />
+
-  </defs>
+         path {
-  <sodipodi:namedview
+         stroke: light-dark(black, white);
-     id="base"
+         }
-     pagecolor="#ffffff"
+      </style>
-     bordercolor="#666666"
+   </defs>
-     borderopacity="1.0"
+   <g
-     inkscape:pageopacity="0.0"
+      transform="translate(-201.95727,-469.32877)">
-     inkscape:pageshadow="2"
+      <path
-     inkscape:zoom="2.365291"
+         style="fill:none;fill-rule:evenodd;stroke-width:6;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
-     inkscape:cx="110.96366"
+         d="m 205,497.3622 h 20 c 1.59641,0 3.22706,-0.0728 4.71101,-0.66135 1.48394,-0.58857 2.74536,-1.65633 3.71836,-2.92194 0.973,-1.26562 1.6829,-2.71578 2.64135,-3.99245 0.47923,-0.63833 1.02956,-1.23277 1.69028,-1.68064 0.66071,-0.44787 1.4408,-0.74362 2.239,-0.74362 0.7982,0 1.57829,0.29575 2.239,0.74362 0.66072,0.44787 1.21105,1.04231 1.69028,1.68064 0.95845,1.27667 1.66835,2.72683 2.64135,3.99245 0.973,1.26561 2.23442,2.33337 3.71836,2.92194 1.48395,0.58857 3.1146,0.66135 4.71101,0.66135 h 20"
-     inkscape:cy="1.1809794"
+         transform="translate(1.2499871,-12.187492)" />
-     inkscape:document-units="px"
+      <path
-     inkscape:current-layer="layer1"
+         style="fill:none;fill-rule:evenodd;stroke-width:6;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
-     showgrid="true"
+         d="m 285,497.3622 20,-25"
-     showguides="false"
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-     inkscape:window-width="1920"
+      <path
-     inkscape:window-height="1023"
+         style="fill:none;fill-rule:evenodd;stroke-width:6;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
-     inkscape:window-x="-4"
+         d="m 285,472.3622 20,25"
-     inkscape:window-y="-4"
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-     inkscape:window-maximized="1"
+   </g>
-     fit-margin-top="0"
-     fit-margin-left="0"
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-         rdf:about="">
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-           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
-        <dc:title></dc:title>
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-     inkscape:groupmode="layer"
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-       sodipodi:nodetypes="csssc"
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-    <path
-       style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:6;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
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-       inkscape:connector-curvature="0"
-       sodipodi:nodetypes="cc" />
-    <path
-       style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:6;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
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-       id="path4158"
-       inkscape:connector-curvature="0"
-       sodipodi:nodetypes="cc" />
-    <!--    <text
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-                 sodipodi:role="line"
-                 id="tspan3348"
-                 x="166.61456"
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-                 style="font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;font-size:14.14374161px;font-family:Garamond;-inkscape-font-specification:'Garamond Bold'">MILLIRON X</tspan></text>
-          -->
-  </g>
 </svg>

assets/scripts/fa-icons.js

@@ -1,74 +0,0 @@
-import { library, icon, config, dom } from "@fortawesome/fontawesome-svg-core";
-import {
-  faBook,
-  faBrowser,
-  faComment,
-  faEllipsis,
-  faFileAlt,
-  faFileSignature,
-  faGraduationCap,
-  faHome,
-  faNotebook,
-  faPodium,
-  faPresentation,
-  faUniversity,
-  faUserAstronaut,
-  faVideo,
-  faW,
-} from "@fortawesome/pro-duotone-svg-icons";
-import {
-  faDiscord,
-  faGithub,
-  faGitlab,
-  faGolang,
-  faHtml5,
-  faOrcid,
-  faStackOverflow,
-  faSteam,
-  faVimeo,
-} from "@fortawesome/free-brands-svg-icons";
-
-config.familyDefault = "duotone";
-config.styleDefault = "duotone";
-
-const faBullSperm = {
-  prefix: "fax",
-  iconName: "bull-sperm",
-  icon: [
-    512,
-    512,
-    [],
-    null,
-    "M96 32c-6.691.363-12.375 4.062-15.375 7.062l-64 64c-12.8 12.8-5.333 26.667 0 32l96 64c10.3 10.301 22.938 4.887 37.563-7.812 8.635 9.735 16.63 18.38 23.125 24.875 8.33 8.33 23.436 16.284 41.75 24.313 18.313 8.028 39.82 16.065 60.812 24.062 20.992 7.997 41.474 15.986 57.625 23.938 16.15 7.95 27.882 16.013 31.5 23.25 6.52 13.038 26.468 44.939 48.875 79.75 22.32 34.674 46.99 72.043 63 96.062.02.029.042.096.064.125.045.064.144.185.189.25l2.812-1.5c-10.685-26.697-28.285-68.26-46.44-106.437-18.155-38.179-36.666-72.792-49.937-86.063-16.566-16.566-56.5-32.375-96.5-48.375s-80.066-32.19-95.5-47.625c-6.45-6.45-14.409-15.11-23.063-24.875 12.926-14.779 18.51-27.552 8.125-37.938-16-26.666-51.2-83.2-64-96-5.6-5.6-11.42-7.345-16.625-7.062zm372.688 436.75c.201.487.488 1.079.687 1.563-.291-.44-.644-.995-.937-1.438.023-.012.06.001.064 0 .002 0 .185-.06.188-.064.002-.001-.011-.038 0-.064z",
-  ],
-};
-
-library.add(
-  faBook,
-  faBrowser,
-  faBullSperm,
-  faComment,
-  faDiscord,
-  faEllipsis,
-  faFileAlt,
-  faFileSignature,
-  faGithub,
-  faGitlab,
-  faGolang,
-  faGraduationCap,
-  faHome,
-  faHtml5,
-  faNotebook,
-  faOrcid,
-  faPodium,
-  faPresentation,
-  faStackOverflow,
-  faSteam,
-  faUniversity,
-  faUserAstronaut,
-  faVideo,
-  faVimeo,
-  faW
-);
-
-dom.i2svg();

assets/scripts/scroll-effect.js

@@ -1,5 +0,0 @@
-$(window).scroll(function (e) {
-  oVal = $(window).scrollTop() / 170;
-  $(".blur").css("opacity", oVal);
-});
-$("#motto").fitText();

assets/scripts/tooltip-enable.js

@@ -1,6 +0,0 @@
-var tooltipTriggerList = [].slice.call(
-  document.querySelectorAll('[data-bs-toggle="tooltip"]')
-);
-var tooltipList = tooltipTriggerList.map(function (tooltipTriggerEl) {
-  return new bootstrap.Tooltip(tooltipTriggerEl);
-});

assets/styles/millironx.css

@@ -0,0 +1,507 @@
+:root {
+  /*
+    Color schemes
+  */
+  color-scheme: light dark;
+  --prickly-pear-yellow: #735f02;
+  --eclipse-gray: #3a3a3a;
+  --pumpkin-olive: #59521c;
+  --manhattan-steel-blue: #224553;
+  --pine-green: #36581d;
+  --brown-swiss-calf-brown: #543c21;
+  --ear-tag-red: #67160e;
+  --flaming-gorge-blue: #1b3e5a;
+  --hayyard-green: #355322;
+  --coeurdalene-purple: #1b245a;
+  --brown-swiss-cow-brown: #563c1f;
+  --buffalo-blue: #0b496a;
+  --saddle-blue: #104165;
+  --brown-swiss-gray: #eaddca;
+  --lavender-purple: #d9c1f6;
+
+  /*
+    Fonts
+  */
+  --font-family-antique: Superclarendon, "Bookman Old Style", "URW Bookman",
+    "URW Bookman L", "Georgia Pro", Georgia, serif;
+  --font-family-slab-serif: Rockwell, "Rockwell Nova", "Roboto Slab",
+    "DejaVu Serif", "Sitka Small", serif;
+  --font-family-system-ui: system-ui, sans-serif;
+}
+
+/*
+  Default element styles (for small screens)
+*/
+
+html {
+  background-color: light-dark(var(--brown-swiss-gray), var(--eclipse-gray));
+  font-family: var(--font-family-slab-serif);
+}
+
+a {
+  color: light-dark(var(--saddle-blue), var(--lavender-purple));
+}
+
+header {
+  display: flex;
+  justify-content: space-evenly;
+  align-items: center;
+}
+
+nav {
+  display: flex;
+  flex-direction: row;
+  overflow: scroll;
+  padding-bottom: 1rem;
+  position: sticky;
+  top: 0;
+}
+
+nav a {
+  color: light-dark(var(--brown-swiss-gray), var(--manhattan-steel-blue));
+  background-color: light-dark(
+    var(--manhattan-steel-blue),
+    var(--brown-swiss-gray)
+  );
+  border-radius: 0.05rem;
+  border-style: outset;
+  border-width: 0.2rem;
+  border-color: light-dark(
+    var(--manhattan-steel-blue),
+    var(--brown-swiss-gray)
+  );
+  min-width: 7.5rem;
+  max-width: 7.5rem;
+  display: flex;
+  justify-content: space-between;
+  align-items: center;
+  margin: 0.2rem;
+  text-decoration: none;
+  padding: 0 0.2rem;
+  font-family: var(--font-family-system-ui);
+}
+
+nav a:active {
+  border-style: inset;
+}
+
+nav a:hover {
+  background-color: light-dark(
+    var(--buffalo-blue),
+    color-mix(in srgb, var(--prickly-pear-yellow), var(--brown-swiss-gray) 75%)
+  );
+}
+
+figure {
+  border-color: light-dark(var(--eclipse-gray), var(--brown-swiss-gray));
+  border-width: 1.5pt;
+  border-style: inset;
+  padding: 1.25pt;
+}
+
+blockquote {
+  background: linear-gradient(
+    to right,
+    light-dark(lightgray, dimgray),
+    color-mix(
+      in srgb,
+      light-dark(var(--brown-swiss-gray), var(--eclipse-gray)),
+      white 25%
+    )
+  );
+  border-left: 5px solid black;
+  padding-left: 6px;
+}
+
+blockquote small::before {
+  content: "\2014 \00A0";
+}
+
+blockquote small {
+  font-size: 80%;
+}
+
+footer {
+  background-color: light-dark(lightgray, dimgray);
+  margin: 0 0 -1em -1em;
+  width: calc(100% - 1em);
+  padding: 0.25em 1.25em;
+  display: flex;
+  justify-content: space-between;
+  align-items: center;
+}
+
+form {
+  margin: 1rem;
+}
+
+fieldset {
+  padding: 1rem;
+}
+
+input,
+select,
+textarea {
+  width: 100%;
+  margin-bottom: 0.5rem;
+}
+
+input:invalid,
+select:invalid,
+textarea:invalid {
+  border-bottom-width: 2px;
+  border-bottom-color: var(--ear-tag-red);
+}
+
+/*
+  Container-type helper classes
+*/
+.row {
+  display: flex;
+  flex-direction: column;
+  width: 100%;
+}
+
+.motto {
+  position: relative;
+  display: grid;
+  place-items: center;
+  text-align: center;
+  color: #fff;
+  font-weight: 600;
+  text-shadow: 0 0 10px rgba(0, 0, 0, 0.33);
+  width: 100%;
+  padding: 0 0 0.5em 0;
+  border-radius: 0.25rem;
+}
+
+.motto::before {
+  content: " ";
+  position: absolute;
+  top: 0;
+  left: 0;
+  width: 100%;
+  height: 100%;
+  box-sizing: border-box;
+  background-size: cover;
+  background-position: 50% 50%;
+}
+
+.motto-inside {
+  position: relative;
+  max-width: 95%;
+  display: grid;
+  place-items: center;
+  text-align: center;
+}
+
+.motto .motto-inside h1 {
+  background-color: rgba(0.33, 0.33, 0.33, 0.33);
+  -webkit-text-stroke: 0.3px lightgray;
+  line-height: 1;
+}
+
+.card {
+  background-color: color-mix(
+    in srgb,
+    light-dark(var(--brown-swiss-gray), var(--eclipse-gray)),
+    white 10%
+  );
+  border-color: light-dark(
+    var(--manhattan-steel-blue),
+    var(--brown-swiss-gray)
+  );
+  border-width: 1.5pt;
+  border-radius: 0.1rem;
+  border-style: outset;
+  margin: 1rem 0;
+  padding: 0.5rem;
+  padding-top: 0;
+  position: relative;
+  display: flex;
+  flex-direction: column;
+}
+
+.card-link {
+  white-space: nowrap;
+  display: inline-flex;
+  gap: 0.375rem;
+  align-items: center;
+  text-underline-offset: 0.25em;
+  backface-visibility: hidden;
+  margin: 0 0.5em;
+}
+
+.category-button {
+  position: absolute;
+  top: 1em;
+  right: 1em;
+  display: grid;
+  color: white;
+  background-color: var(--ear-tag-red);
+  border-radius: 0.5em;
+  padding: 1em;
+}
+
+.card-title {
+  margin-right: 3em;
+}
+
+.card-title > a {
+  color: inherit;
+}
+
+.img-thumbnail {
+  width: 100%;
+  height: auto;
+  margin-top: 0.5rem;
+}
+
+.thumb-icon-wrapper {
+  margin-top: 1rem;
+  display: flex;
+  justify-content: center;
+  align-content: center;
+}
+
+.thumb-icon-badge {
+  font-size: xx-large;
+  justify-self: center;
+  align-self: center;
+  padding: 1.5rem 3rem;
+  border-radius: 3rem;
+  background-color: var(--ear-tag-red);
+  color: white;
+}
+
+.fa-container svg {
+  overflow: visible;
+  box-sizing: content-box;
+  display: inline-block;
+  height: 1em;
+  width: 1.25em;
+  vertical-align: -0.125em;
+}
+
+.fa-container svg path {
+  fill: currentColor;
+}
+
+.account-list {
+  display: flex;
+  justify-content: space-evenly;
+}
+
+.account-list a {
+  font-size: xx-large;
+  text-decoration: none;
+  color: inherit;
+}
+
+/*
+  Helper classes
+*/
+.font-small-caps {
+  font-variant-caps: small-caps;
+}
+
+.img-fluid {
+  max-width: 100%;
+  height: auto;
+}
+
+.float-left {
+  float: none;
+  max-width: 100%;
+}
+
+.float-right {
+  float: none;
+  max-width: 100%;
+}
+
+/*
+  Application-state helper classes
+*/
+@media (prefers-color-scheme: light) {
+  .active {
+    background-color: var(--coeurdalene-purple);
+  }
+}
+
+@media (prefers-color-scheme: dark) {
+  .active {
+    color: color-mix(in srgb, var(--manhattan-steel-blue), white 75%);
+    background-color: color-mix(in srgb, var(--brown-swiss-gray), black 75%);
+    border-color: color-mix(in srgb, var(--brown-swiss-gray), black 50%);
+  }
+}
+
+/*
+  Desktop screen size adjustments
+*/
+@media (min-width: 768px) {
+  /*
+    Default element styles
+  */
+  nav {
+    flex-direction: column;
+    padding-right: 1rem;
+    padding-bottom: 0;
+
+    /*
+      Workaround for Chrome always showing scrollbar even when scrolling not needed
+    */
+    -ms-overflow-style: none;
+    scrollbar-width: none;
+  }
+
+  /*
+    Continued Chrome workaround
+  */
+  nav::-webkit-scrollbar {
+    display: none;
+  }
+
+  main {
+    width: calc(100% - 10rem);
+  }
+
+  /*
+    Container-type helper classes
+  */
+  .row {
+    flex-direction: row;
+  }
+
+  /*
+    Helper classes
+  */
+  .float-left {
+    float: left;
+    max-width: 50%;
+  }
+
+  .float-right {
+    float: right;
+    max-width: 50%;
+  }
+
+  .card {
+    flex-direction: row;
+  }
+
+  .img-thumbnail {
+    margin-right: 1rem;
+  }
+
+  .card-header {
+    width: 20vw;
+    flex-shrink: 0;
+  }
+
+  .card-body {
+    margin-left: 1rem;
+  }
+
+  .bolder {
+    font-weight: bolder;
+    background-color: rgba(0, 0, 0, 0.33);
+    border-radius: 0.25em;
+    padding: 0.25em 0.75em 0.5em 0.33em;
+  }
+
+  /*
+    Clearfix implementation
+  */
+  h1::before,
+  h2::before,
+  h3::before,
+  h4::before,
+  h5::before,
+  h6::before {
+    content: " "; /* Older browser do not support empty content */
+    visibility: hidden;
+    display: block;
+    height: 0;
+    clear: both;
+  }
+} /* end @media */
+
+@supports (animation-timeline: scroll()) and (animation-range: 0 50vh) {
+  @keyframes sticky-header {
+    from {
+      height: 50vh;
+      top: 6rem;
+    }
+
+    to {
+      height: 10vh;
+      top: -1rem;
+    }
+  }
+
+  @keyframes blurry-header {
+    from {
+      filter: blur(0);
+    }
+
+    to {
+      filter: blur(2px);
+    }
+  }
+
+  @keyframes transparent-text-bg {
+    from {
+      background-color: rgba(0.33, 0.33, 0.33, 0.33);
+    }
+    to {
+      background-color: rgba(0.33, 0.33, 0.33, 0);
+    }
+  }
+
+  main,
+  footer {
+    position: relative;
+    top: 55vh;
+  }
+
+  .motto {
+    position: fixed;
+    top: 12rem;
+
+    animation: sticky-header linear forwards;
+    animation-timeline: scroll();
+    animation-range: 0.001vh 50vh;
+  }
+
+  .motto::before {
+    filter: blur(12px);
+
+    top: 2rem;
+
+    animation: blurry-header linear forwards;
+    animation-timeline: scroll();
+    animation-range: 0.001vh 50vh;
+  }
+
+  .motto-inside h1 {
+    animation: transparent-text-bg linear forwards;
+    animation-timeline: scroll();
+    animation-range: 0.001vh 40vh;
+  }
+
+  .card {
+    z-index: -1;
+  }
+
+  @media (min-width: 768px) {
+    .motto {
+      width: calc(100% - 8rem);
+    }
+
+    .motto::before {
+      top: 0;
+    }
+  }
+} /* end @supports */

assets/styles/mix-twbs.scss

@@ -1,8 +1,17 @@
+$web-font-path: "/fonts/nunito-sans/index.css";
+
+@import "bootstrap/functions";
+@import "bootswatch/lux/variables";
+@import "bootstrap/bootstrap";
+@import "bootswatch/lux/bootswatch";
+
+$peek-height: 25rem;
+
 .blurred-container {
   position: relative;
   width: 100%;
   min-height: 35vh;
-  height: 350px;
+  height: $peek-height;
   top: 0;
   left: 0;
 }
@@ -25,25 +34,30 @@
 
 .motto h1 {
   background: #0000007d;
+  -webkit-text-stroke: 0.3px $gray-100;
+  line-height: 1;
 }
 
 .blurred-container .img-src {
   position: fixed;
   width: 100%;
   min-height: 35vh;
-  height: 350px;
+  height: $peek-height;
   background-repeat: no-repeat;
   background-size: cover;
   background-position: center center;
 }
 
-.blur {
-  opacity: 0;
-}
-
 .list-main {
   position: relative;
   background-color: #fff;
+  padding-bottom: calc(1rem + 95px);
+  padding-top: 1rem;
+}
+
+.footer-contents {
+  position: relative;
+  background-color: $gray-200;
 }
 
 /* Gives me greater control over fonts */
@@ -121,3 +135,45 @@ h1 {
 .fa-stack-top {
   vertical-align: top;
 }
+
+.table-condensed th {
+  padding: 0.5rem;
+}
+
+.table-condensed td {
+  padding: 0.5rem;
+}
+
+@media (min-width: map-get($grid-breakpoints, md)) {
+  .fixed-bottom {
+    left: 25%;
+  }
+
+  .md-max-width-33 {
+    max-width: 33%;
+  }
+}
+
+.card-link {
+  white-space: nowrap;
+}
+
+.category-button {
+  position: absolute;
+  top: 1em;
+  right: 1em;
+  display: grid;
+}
+
+.card-title {
+  margin-right: 2.25em;
+}
+
+.thumb-icon-wrapper {
+  display: flex;
+  justify-content: center;
+}
+
+.thumb-icon-badge {
+  font-size: xx-large;
+}

config.toml

@@ -10,8 +10,17 @@ writeStats = true
 cardImage = "saddles"
 motto = ""
 
+[taxonomies]
+people = "people"
+tag = "tags"
+category = "categories"
+
 [module]
 
+[[module.mounts]]
+source = "static"
+target = "static"
+
 [[module.mounts]]
 source = "assets/graphics"
 target = "assets/graphics"
@@ -44,6 +53,14 @@ target = "assets/scripts/popper"
 source = "./node_modules/bootstrap/scss"
 target = "assets/styles/bootstrap"
 
+[[module.mounts]]
+source = "./node_modules/bootswatch/dist/"
+target = "assets/styles/bootswatch"
+
+[[module.mounts]]
+source = "./node_modules/@openfonts/nunito-sans_all"
+target = "static/fonts/nunito-sans"
+
 [[module.mounts]]
 source = "./node_modules/bootstrap/dist/js"
 target = "assets/scripts/bootstrap"
@@ -59,3 +76,7 @@ target = "assets/scripts/jquery"
 [[module.mounts]]
 source = "./node_modules/jquery-mask-plugin/dist"
 target = "assets/scripts/jquery-mask-plugin"
+
+[[module.mounts]]
+source = "./node_modules/masonry-layout/dist"
+target = "assets/scripts/masonry"

content/_index.html

@@ -1,164 +0,0 @@
----
-title: Home
-cardImage: charolette
-motto: <small>My name is Thomas Christensen</small><br />I am Milliron X
-description: The homepage of Thomas A. Christensen II
-layout: _default/list
----
-
-<h2>What is a "Milliron X"?</h2>
-
-<h3>
-  It's a
-  <a href="https://en.wikipedia.org/wiki/Livestock_branding">cattle brand</a>,
-  of course! My cattle brand!
-</h3>
-
-<p>
-  The <dfn>milliron</dfn> is the bar with a bend in the middle. It does not
-  represent anything physical or textual <i>per se</i>, and is therefore a
-  rather unique element in cattle brands. Millirons are difficult to modify into
-  another brand, and provide a guarantee of authentic ownership.
-</p>
-
-<p>
-  <dfn>X</dfn> is the letter of mystery and mystique. For nerds, it's the
-  unknown in any algebra problem. Ranchers and cowboys will associate it with
-  big names like the "Bar X" and the "Double X." In either case, it lends itself
-  to a sense of withholding, prestige, and power.
-</p>
-
-<p>
-  Together, these two symbols represent the qualities I strive for in each of my
-  works: authenticity, originality, power, depth, and prestige.
-</p>
-
-<h2>Who am I?</h2>
-
-{{% imgproc me-and-lady Resize "768x" "float-md-end w-md-50 p-3" %}}
-Image courtesy [Guy McCutcheon Photography](https://www.guymccutcheon.com/)
-{{% /imgproc %}}
-
-
-<p>I am</p>
-
-<ul>
-  <li>🧬 A bioinformatician (by profession)</li>
-  <li>📐 An engineer (by education)</li>
-  <li>🐂 A rancher (by lifestyle)</li>
-  <li>🖥️ A techie (self-taught)</li>
-  <li>🎥 And a filmmaker (at heart)</li>
-</ul>
-
-<p>
-  I've got a soft spot for Brown Swiss dairy cows (just in case you couldn't
-  tell by the pictures), and am sometimes called "one of those crazy, Wyoming
-  dairy cow people." I love anything to do with cattle or technology, but
-  especially anything to do with both of them.
-</p>
-
-<p>
-  <em>
-    <abbr
-      title="Born again, fundamentalist, dispensationalist, King James Bible-believing, independent Baptist"
-      >Christian</abbr
-    >, American, Convervative, Pro-gun, Heterosexual - any questions?
-  </em>
-</p>
-
-<h2>Where am I?</h2>
-
-{{% imgproc wy-in-ks Resize "768x" "float-md-start w-md-50 p-3" /%}}
-
-<p>
-  I am a Wyomingite sojurning in Kansas. That ought to lead to some interesting
-  stories.
-</p>
-
-Around the web you can find me at (in order of subjective importance)
-
-<ul class="float-md-end w-md-50">
-  <li>
-    <i class="fab fa-fw fa-github"></i> GitHub:
-    <a href="https://github.com/MillironX">@MillironX</a>
-  </li>
-  <li>
-    <i class="fab fa-fw fa-orcid"></i>
-    ORCiD:
-    <a href="https://orcid.org/0000-0003-1219-9320">0000-0003-1219-9320</a>
-  </li>
-  <li>
-    <i class="fab fa-fw fa-gitlab"></i>
-    GitLab: <a href="https://gitlab.com/MillironX">@MillironX</a>
-  </li>
-  <li>
-    <i class="fab fa-fw fa-vimeo"></i>
-    Vimeo: <a href="https://vimeo.com/tchristensenii">Thomas Christensen II</a>
-  </li>
-  <li>
-    <i class="fab fa-fw fa-stack-overflow"></i>
-    Stack Exchange:
-    <a href="https://stackexchange.com/users/4863541/milliron-x">Milliron X</a>
-  </li>
-  <li>
-    <i class="fad fa-fw fa-user-astronaut"></i>
-    Odysee: <a href="https://odysee.com/@millironx:f">@millironx</a>
-  </li>
-  <li>
-    <span class="fa-layers fa-fw">
-      <i class="fad fa-fw fa-comment"></i>
-      <span class="fa-layers-text" data-fa-transform="shrink-6 up-2">g</span>
-    </span>
-    Gab: <a href="https://gab.com/millironx">@MillironX</a>
-  </li>
-  <li>
-    <i class="fab fa-fw fa-steam"></i>
-    Steam: <a href="https://steamcommunity.com/id/millironx">MillironX</a>
-  </li>
-  <li>
-    <span class="fa-layers fa-fw">
-      <i class="fad fa-fw fa-w" data-fa-transform="shrink-2 down-2"></i>
-      <i class="fad fa-fw fa-ellipsis" data-fa-transform="grow-3 up-8"></i>
-    </span>
-    MeWe:
-    <a href="https://mewe.com/i/thomaschristensenii">Thomas Christensen II</a>
-  </li>
-  <li>
-    <i class="fab fa-fw fa-discord"></i>
-    Discord:
-    <a href="https://discord.com/users/484492414837587978">@MillironX</a>
-  </li>
-</ul>
-
-<div style="clear: both;"></div>
-
-<div class="card border-warning m-3">
-  <div class="card-body">
-    <p class="card-text">
-      This list is intended to verify my identity on other sites. Please do
-      <em>not</em> use it as fodder to try and "follow" me on each of these
-      platforms. I stand with RMS:
-    </p>
-    <figure>
-      <blockquote class="blockquote">
-        <p>
-          Facebook is a bad place for a person to be. When people find us on
-          Facebook, we lead them away from Facebook and then talk with them
-          elsewhere.
-        </p>
-      </blockquote>
-      <figcaption class="blockquote-footer">
-        Richard Stallman in
-        <cite
-          ><a href="https://stallman.org/facebook-presence.html"
-            >If you feel your organization needs a 'presence' in Facebook</a
-          ></cite
-        >
-      </figcaption>
-    </figure>
-    <p class="card-text">
-      I typically don't respond to inqueries made on these platforms. Please use
-      <a href="/contact">my contact form</a>, instead.
-    </p>
-  </div>
-</div>

content/_index.md

@@ -0,0 +1,88 @@
+---
+title: Home
+cardImage: charolette
+cardImageDescription: She almost looks like she's in her native country again.
+motto: <small>My name is Thomas Christensen</small><br />I am Milliron X
+description: The homepage of Thomas A. Christensen II
+layout: _default/list
+menu:
+  main:
+    params:
+      icon: home
+    weight: -1000
+---
+
+## What is a "Milliron X"?
+
+It's a [cattle brand](https://en.wikipedia.org/wiki/Livestock_branding), of
+course! My cattle brand!
+
+The <dfn>milliron</dfn> is the bar with a bend in the middle. It does not
+represent anything physical or textual _per se_, and is therefore a rather
+unique element in cattle brands. Millirons are difficult to modify into another
+brand, and provide a guarantee of authentic ownership.
+
+<dfn>X</dfn> is the letter of mystery and mystique. For nerds, it's the unknown
+in any algebra problem. Ranchers and cowboys will associate it with big names
+like the "Bar X" and the "Double X." In either case, it lends itself to a sense
+of withholding, prestige, and power.
+
+Together, these two symbols represent the qualities I strive for in each of my
+works: authenticity, originality, power, depth, and prestige.
+
+## Who am I?
+
+{{< imgproc me-and-lady Resize "768x" "float-right" >}} Image courtesy
+[Guy McCutcheon Photography](https://www.guymccutcheon.com/) {{< /imgproc >}}
+
+I am
+
+- 🧬 A bioinformatician (by profession)
+- 📐 An engineer (by education)
+- 🐂 A rancher (by lifestyle)
+- 🖥️ A techie (self-taught)
+- 🎥 And a filmmaker (at heart)
+
+I've got a soft spot for Brown Swiss dairy cows (just in case you couldn't tell
+by the pictures), and am sometimes called "one of those crazy, Wyoming dairy cow
+people." I love anything to do with cattle or technology, but especially
+anything to do with both of them.
+
+_<abbr
+      title="Born again, fundamentalist, dispensationalist, King James Bible-believing, independent Baptist"
+      >Christian</abbr
+    >, American, Convervative, Pro-gun, Heterosexual - any questions?_
+
+## Where am I?
+
+{{< imgproc wy-in-ks Resize "768x" "float-left" / >}}
+
+I am a Wyomingite sojurning in Kansas. That ought to lead to some interesting
+stories.
+
+Around the web you can find me at (in order of subjective importance)
+
+- {{< fa github >}} GitHub: [@MillironX](https://github.com/MillironX)
+- {{< fa orcid >}} ORDiD:
+  [0000-0003-1219-9320](https://orcid.org/0000-0003-1219-9320)
+- {{< fa gitlab >}} GitLab: [@MillironX](https://gitlab.com/MillironX)
+- {{< fa vimeo >}} Vimeo:
+  [Thomas Christensen II](https://vimeo.com/tchristensenii)
+- {{< fa stack-overflow >}} StackExchange:
+  [Milliron X](https://stackexchange.com/users/4863541/milliron-x)
+- {{< fa steam >}} Steam: [MillironX](https://steamcommunity.com/id/millironx)
+
+This list is intended to verify my identity on other sites. Please do _not_ use
+it as fodder to try and "follow" me on each of these platforms. I stand with
+RMS:
+
+{{< blockquote "Richard Stallman _in_ [If you feel your organization needs a 'presence' in Facebook](https://stallman.org/facebook-presence.html)" >}}
+Facebook is a bad place for a person to be. When people find us on Facebook, we
+lead them away from Facebook and then talk with them elsewhere.
+{{< /blockquote >}}
+
+I typically don't respond to inquiries made on these platforms. Please use
+[my contact form](/contact), instead.
+
+  </div>
+</div>

content/academia/_index.md

@@ -1,7 +1,26 @@
 ---
 title: Academic Publications and Presentations
-motto: Academic Publications and Presentations
+motto: Publications and Presentations
 cardImage: library
+cardImageDescription:
+  Personally, I preferred the Owen Library in Pullman seven miles west
+description: A list of my academic publications
+menu:
+  main:
+    name: Academia
+    params:
+      icon: university
+    weight: 20
+fa-thumbnail: university
 ---
 
-### Academic Papers
+> I have spent too long in school and not enough time in the middle of nowhere
+>
+> -- Baxter Black, DVM
+
+During my time in academia, I have amassed a few notable accomplishments. Of
+course, as the old saying goes, "if it isn't published, then it never happened,"
+so here is a list of everything that actually happened. Several of these
+articles are also available on
+[my Google Scholar page](https://scholar.google.com/citations?user=gbP4RDgAAAAJ),
+but this is the complete list.

content/academia/cheme-car/index.md

@@ -4,16 +4,17 @@ date: 2019-05-14
 cardImage: cannulated-cows
 draft: false
 featured: true
-keywords:
+tags:
   - chemical engineering
   - AIChE
   - radiation
   - rumen
   - microbial electrolysis cells
-medium: thesis
+categories:
-authors:
+  - thesis
+people:
   - Thomas A. Christensen II
-link: "/academia/cheme-car/cud_cheme_car_web.pdf"
+link: https://doi.org/10.15786/13700938.v1
 journal: "University of Wyoming Honors Program"
 location: "Laramie, Wyoming"
 ---

content/academia/how-to-build-a-cow-cud-fuel-cell.md

@@ -4,8 +4,9 @@ date: 2018-08-01
 cardImage: library
 draft: false
 featured: false
-medium: presentation
+categories:
-authors:
+  - presentation
+people:
   - Thomas A. Christensen II
 journal: "Idaho INBRE Summer Research Conference"
 location: "Moscow, Idaho"

content/academia/hydronium-pva.md

@@ -1,15 +1,18 @@
 ---
-title: "Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation"
+title:
+  "Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A
+  Critical First Step to Describe Acid Transport for Encapsulated Bioremediation"
 date: 2022-09-02
 featured: false
-keywords:
+tags:
   - diffusion
   - hydrogels
   - ionic strength
   - polymers
   - transport properties
-medium: paper
+categories:
-authors:
+  - paper
+people:
   - Carson J. Silsby
   - Jonathan R. Counts
   - Thomas A. Christensen II
@@ -20,4 +23,23 @@ link: https://doi.org/10.1021/acsestengg.2c00107
 journal: "ACS ES&T Engineering"
 ---
 
-Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured. Variations in hydrogel crosslinking conditions, polymer composition, and solvent ionic strength were investigated to understand how each influenced hydronium ion diffusivity. A three-way ANOVA indicated that the ionic strength, membrane type, and crosslinking method significantly (_p_ < 0.001) contributed to changes in hydronium ion mass transfer. Hydronium ion diffusion increased with ionic strength, counter to what is observed in aqueous-only (no polymer) solutions. Co-occurring mechanisms correlated to increased hydronium ion diffusion with ionic strength included an increased water fraction within hydrogel matrices and hydrogel contraction. Measured diffusion rates determined in this study provide first principal design information to further optimize encapsulating hydrogels for bioremediation.
+Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be
+hindered by high contaminant concentrations and acids generated during
+remediation. Encapsulating microbes in hydrogels may provide a protective,
+tunable environment from inhibiting compounds; however, current approaches to
+formulate successful encapsulated systems rely on trial and error rather than
+engineering approaches because fundamental information on mass-transfer
+coefficients is lacking. To address this knowledge gap, hydronium ion
+mass-transfer rates through two commonly used hydrogel materials, poly(vinyl
+alcohol) and alginic acid, under two solidification methods (chemical and
+cryogenic) were measured. Variations in hydrogel crosslinking conditions,
+polymer composition, and solvent ionic strength were investigated to understand
+how each influenced hydronium ion diffusivity. A three-way ANOVA indicated that
+the ionic strength, membrane type, and crosslinking method significantly (_p_ <
+0.001) contributed to changes in hydronium ion mass transfer. Hydronium ion
+diffusion increased with ionic strength, counter to what is observed in
+aqueous-only (no polymer) solutions. Co-occurring mechanisms correlated to
+increased hydronium ion diffusion with ionic strength included an increased
+water fraction within hydrogel matrices and hydrogel contraction. Measured
+diffusion rates determined in this study provide first principal design
+information to further optimize encapsulating hydrogels for bioremediation.

content/academia/metagenomics/index.md

@@ -6,13 +6,14 @@ date: 2019-06-12
 cardImage: cannulated-cows
 draft: false
 featured: true
-keywords:
+tags:
   - gestation
   - metagenomics
   - microbiome
   - rumen
-medium: poster
+categories:
-authors:
+  - poster
+people:
   - Thomas A. Christensen II
   - Kathy J. Austin
   - Kristi M. Cammack

content/academia/pva-aiche/index.md

@@ -6,14 +6,15 @@ date: 2018-10-29
 cardImage: library
 draft: false
 featured: false
-keywords:
+tags:
   - bioremediation
   - polyoxometalate
   - hydrogel polymers
   - proton transport
   - chemical engineering
-medium: poster
+categories:
-authors:
+  - poster
+people:
   - Thomas A. Christensen II
   - Samuel R. Wolfe
   - Jonathan Counts

content/academia/pva-inbre.md

@@ -4,8 +4,9 @@ date: 2018-07-31
 cardImage: library
 draft: false
 featured: false
-medium: poster
+categories:
-authors:
+  - poster
+people:
   - Thomas A. Christensen II
   - Jonathan Counts
   - James G. Moberly

content/academia/rotavirus-virome.md

@@ -5,13 +5,14 @@ title:
 date: 2022-04-27
 cardImage: cannulated-cows
 featured: true
-keywords:
+tags:
   - porcine rotavirus
   - porcine enteric disease
   - virome
   - rotavirus
-medium: paper
+categories:
-authors:
+  - paper
+people:
   - Tyler Doerksen
   - Thomas A. Christensen II
   - Andrea Lu

content/academia/taxprofiler.md

@@ -0,0 +1,24 @@
+---
+title:
+  "nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling"
+date: 2023-10-23
+featured: true
+tags:
+  - genomics
+categories:
+  - paper
+people:
+  - Sofia Stamouli
+  - Moritz E. Beber
+  - Tanja Normark
+  - Thomas A. Christensen II
+  - Lili Andersson-Li
+  - Maxime Borry
+  - Mahwash Jamy
+  - nf-core community
+  - James A. Fellows Yate
+link: https://doi.org/10.1101/2023.10.20.563221
+journal: bioRxiv
+---
+
+Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline. It is designed for the automated and simultaneous classification and/or profiling of both short- and long-read metagenomic sequencing libraries against a 11 taxonomic classifiers and profilers as well as databases within a single pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the pipeline benefits from high levels of scalability and portability, accommodating from small to extremely large projects on a wide range of computing infrastructure. It has been developed following best-practise software development practises and community support to ensure longevity and adaptability of the pipeline, to help keep it up to date with the field of metagenomics.

content/academia/thesis.md

@@ -6,14 +6,15 @@ date: 2020-08-07
 cardImage: library
 draft: false
 featured: true
-keywords:
+tags:
   - bioremediation
   - polyoxometalate
   - hydrogel polymers
   - proton transport
   - chemical engineering
-medium: thesis
+categories:
-authors:
+  - thesis
+people:
   - Thomas A. Christensen II
 link: "https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2"
 journal: "University of Idaho"

content/ai/_index.md

@@ -1,12 +0,0 @@
----
-title: Artificial Insemination
-cardImage: Ai-calf
-motto: Artificial Insemination
----
-
-I am licensed in the Great State of Wyoming as a food animal artificial
-insemination technician, which means I can legally AI cows, goats, and sheep.
-Practically speaking, I have only ever AIed cows, but my conception rates are
-very good for both beef and dairy cows. When (if?) I standardize my rates, I
-will include them here. Until then, you will have to [contact me](/contact)
-directly and we can negotiate prices then.

content/blogroll/_index.md

@@ -17,9 +17,9 @@ McGee does just that.
 
 ### [Enoch the Cow Vet](https://youtube.com/channel/UC6PPmHUbcdOSzX5tLB3uXdw)
 
-A veternarian/agricultural channel that doesn't make me cringe. "God built these
+A veterinarian/agricultural channel that doesn't make me cringe. "God built
-things for cows for vets ... [there are] so many aspects of the cow that are
+these things for cows for vets ... [there are] so many aspects of the cow that
-just designed for vets." Amen, Enoch. Amen.
+are just designed for vets." Amen, Enoch. Amen.
 
 ### [Proglogion](https://blog.drwile.com/)
 

content/code/_index.md

@@ -0,0 +1,9 @@
+---
+menu:
+  main:
+    name: Code
+    params:
+      icon: code
+      link: https://code.millironx.com
+    weight: 50
+---

content/contact/_index.html

@@ -1,88 +1,73 @@
 ---
 title: Contact Me
 cardImage: venice-mailbox
+cardImageDescription:
+  This mailbox was used for reporting public health offenses in Venice. It
+  survived the wrath of Napoleon because it didn't look enough like a lion.
 motto: Contact Me
+description: Contact form to get ahold of me
+date: 2023-07-01
+menu:
+  main:
+    name: Contact
+    params:
+      icon: file-signature
+    weight: 1
+fa-thumbnail: file-signature
+validation: true
 ---
 
-<form
+<form action="https://usebasin.com/f/787df7bfd22e" method="post">
-  class="form-horizontal"
-  action="https://usebasin.com/f/787df7bfd22e"
-  method="post"
->
   <fieldset>
     <legend>Contact Me</legend>
     <input type="hidden" name="_gotcha" />
-    <div class="form-group">
+    <label for="name">Name</label>
-      <label for="name" class="col-lg-2 control-label">Name</label>
+    <input
-      <div class="col-lg-10">
+      type="text"
-        <input
+      class="form-control"
-          type="text"
+      id="name"
-          class="form-control"
+      name="name"
-          id="name"
+      placeholder="Jay Lush"
-          name="name"
+      required
-          placeholder="Jay Lush"
+    />
-          required
+    <label for="email">Email</label>
-        />
+    <input
-      </div>
+      type="email"
-    </div>
+      class="form-control"
-    <div class="form-group">
+      id="email"
-      <label for="email" class="col-lg-2 control-label">Email</label>
+      name="email"
-      <div class="col-lg-10">
+      placeholder="jlush@iastate.edu"
-        <input
+      required
-          type="email"
+    />
-          class="form-control"
+    <label for="phone">Phone number</label>
-          id="email"
+    <input
-          name="email"
+      type="tel"
-          placeholder="jlush@iastate.edu"
+      class="form-control"
-          required
+      id="phone"
-        />
+      name="phone"
-      </div>
+      placeholder="(515) 294-2160"
-    </div>
+    />
-    <div class="form-group">
+    <label for="subject">Subject</label>
-      <label for="phone" class="col-lg-2 control-label">Phone number</label>
+    <input
-      <div class="col-lg-10">
+      type="text"
-        <input
+      class="form-control"
-          type="tel"
+      id="subject"
-          class="form-control"
+      name="subject"
-          id="phone"
+      placeholder="Beef genetics"
-          name="phone"
+      required
-          placeholder="(515) 294-2160"
+    />
-        />
+    <label for="message">Message</label>
-      </div>
+    <textarea
-    </div>
+      rows="5"
-    <div class="form-group">
+      class="form-control font-sans"
-      <label for="subject" class="col-lg-2 control-label">Subject</label>
+      id="message"
-      <div class="col-lg-10">
+      name="body"
-        <input
+      required
-          type="text"
+      style="min-height: 72pt;"
-          class="form-control"
+    ></textarea>
-          id="subject"
+    <button type="reset" class="btn btn-default">Cancel</button>
-          name="subject"
+    <button type="submit" class="btn btn-primary pageclip-form__submit">
-          placeholder="Beef genetics"
+      <span>Submit</span>
-          required
+    </button>
-        />
-      </div>
-    </div>
-    <div class="form-group">
-      <label for="message" class="col-lg-2 control-label">Message</label>
-      <div class="col-lg-10">
-        <textarea
-          rows="5"
-          class="form-control font-sans"
-          id="message"
-          name="body"
-          required
-          style="min-height: 72pt;"
-        ></textarea>
-      </div>
-    </div>
-    <div class="form-group">
-      <div class="col-lg-10 col-lg-offset-2">
-        <button type="reset" class="btn btn-default">Cancel</button>
-        <button type="submit" class="btn btn-primary pageclip-form__submit">
-          <span>Submit</span>
-        </button>
-      </div>
-    </div>
   </fieldset>
 </form>

content/login/index.md

@@ -0,0 +1,9 @@
+---
+menu:
+  main:
+    name: Login
+    params:
+      icon: right-to-bracket
+      link: https://youtu.be/dQw4w9WgXcQ
+    weight: 99
+---

content/people/thomas-a.-christensen-ii/_index.md

@@ -0,0 +1,30 @@
+---
+title: "Thomas A. Christensen II"
+menu:
+  main:
+    name: About
+    params:
+      icon: circle-info
+    weight: -900
+accounts:
+  chocolatey: millironx
+  codeberg: millironx
+  ebay: millironx
+  epic: millironx
+  google-scholar: gbP4RDgAAAAJ
+  github: MillironX
+  gitlab: millironx
+  hacker-news: millironx
+  internet-archive: millironx
+  lutris: MillironX
+  matrix: "@millironx:matrix.org"
+  orcid: 0000-0003-1219-9320
+  pandora: ccleathercraft
+  quay: millironx
+  spotify: ctr31wfst0f9bg31vbbq8qe7n
+  steam: millironx
+  vimeo: tchristensenii
+  zotero: millironx
+---
+
+I'm a Wyomingite in Kansas.

content/posts/_index.md

@@ -0,0 +1,13 @@
+---
+title: "ChemE Cows"
+cardImage: saddles
+motto:
+  ChemE Cows<br /><small>A blog about cattle, technology, or anything remotely
+  affecting either of them</small>
+menu:
+  main:
+    name: Blog
+    params:
+      icon: block-quote
+    weight: 2
+---

content/videos/_index.md

@@ -1,7 +1,19 @@
 ---
 title: Videos
 cardImage: camera
+cardImageDescription:
+  Isn't it a shame that the company that brought photography to the masses is
+  basically out of business now?
 motto: Videography Portfolio
+description: Showcase of my own videos
+menu:
+  main:
+    params:
+      icon: video
+      link: https://video.millironx.com
+    weight: 50
+fa-thumbnail: video
+link: https://video.millironx.com
 ---
 
 > ### The culmination of all art forms is that of film.
@@ -11,6 +23,6 @@ and stunning as sculpture, a rhythm as driving and delicate as poetry, frame
 compositions more stellar that those of photography, and music that speaks to
 the souls of both the characters on screen and the viewers off.
 
-But I digress. Most of my forays into the world of film are immortalized on [my
+But I digress. Most of my forays into the world of film are immortalized on
-Vimeo account](https://vimeo.com/tchristensenii), but I decided to share a few
+[my Peertube channel](https://video.millironx.com/c/mix_studios/videos), but I
-highlights here. Enjoy!
+decided to share a few highlights here. Enjoy!

content/videos/ag-olympics-reel.md

@@ -1,12 +0,0 @@
----
-title: "Farm Bureau Ag Olympics Reel"
-date: 2017-02-16
-storage: yt
-storageId: jhLJp3OFsYM
-thumbnail: https://i.ytimg.com/vi_webp/jhLJp3OFsYM/maxresdefault.webp
----
-
-The Albany County Farm Bureau Young Farmer's and Rancher's committee asked me to
-come and shoot a highlight reel of the Ag Olympics booth they ran at the Wyoming
-Football Wyoming Needs Agriculture Day. I gave away all rights to this one
-except for bragging rights.

content/videos/if-you-come-out-to-the-fair.md

@@ -1,11 +0,0 @@
----
-title: If You Come Out to the Fair
-date: 2016-10-13
-storage: vimeo
-storageId: 191326975
-thumbnail: https://i.vimeocdn.com/video/604398739-ad61494f60c56836508e11001b39ad5228c2cc41c2b7ab1ca6f1bc8255a173e2-d?mw=1200&mh=675&q=70
----
-
-My extension agent asked me to make a promotional video for our county fair.
-This is the only film of mine that has drawn an emotional response. I think I
-retired after this.

content/videos/in-the-hayfields.md

@@ -1,12 +0,0 @@
----
-title: In The Hayfields
-date: 2015-10-05
-storage: vimeo
-storageId: 144811104
-thumbnail: https://i.vimeocdn.com/video/542754357-e316fb6ef98be3ed442c582ff2982f9a00c79c854c3afd2a07ed17f985bde60d-d?mw=1200&mh=675&q=70
----
-
-I always get the comment that our implements are _old_ whenever I show this
-video off. I just ignore the naysayers, though, and good thing, too, because a
-version of this video won a [GoPro Award](https://gopro.com/awards). Still
-waiting to see my footage on their channel, though.

content/videos/non-verum.md

@@ -1,14 +0,0 @@
----
-title: "Non. Verum: The Mystery Killer"
-date: 2015-06-12
-storage: vimeo
-storageId: 130557155
-thumbnail: https://i.vimeocdn.com/video/522472352-4e0adaa9150464843aff5ffd20540b1cf98912536bcd847892a759fa82fe1725-d?mw=1200&mh=675&q=70
----
-
-My first ~~documentary~~ mockumentary. This film won 2{{< sup nd >}} place at
-the [2016 National 4-H Film Festival](http://4h.missouri.edu/filmfest4h/), and
-I've been told that it's more polished than the pieces done by the local TV
-stations. No one seems to think it's funny, though, so I'm not sure how
-successful it was. Please do me a favor and google **every** term you don't
-understand while watching it, and perhaps you'll fare better.

content/websites/_index.md

@@ -1,10 +0,0 @@
----
-title: My Websites
-cardImage: eclipse
-motto: Websites
----
-
-I do occasionally build websites for myself and other people. Here is a list of
-websites I have contributed code to directly, in a vain attempt to gain each of
-them some
-[search engine cred](https://en.wikipedia.org/wiki/Search_engine_optimization).

content/websites/millironx/index.md

@@ -1,11 +0,0 @@
----
-title: Milliron X
-date: 2022-03-01
-platform: Hugo
-platformIcon: fab fa-golang
-platformURL: https://gohugo.io/
-deployURL: https://millironx.com
-sourceURL: https://github.com/MillironX/millironx.github.io
----
-
-Lo and behold: I made my own website!

content/websites/record-books/index.md

@@ -1,14 +0,0 @@
----
-title: Albany County 4-H Record Books
-date: 2019-08-10
-platform: Plain ol' HTML5
-platformIcon: fab fa-html5
-platformURL: https://www.w3.org/html/
-deployURL: http://wyoming4h.org/albany4h/record-book
-sourceURL: https://github.com/MillironX/4h-record-books
----
-
-I constructed this site to hold the record book helps of the rebellious Albany
-County, Wyoming. Due to the bureaucratic lag that it takes to update, it got
-updated just in time for Wyoming 4-H to ditch paper record books entirely. Oh,
-well.

default.nix

@@ -0,0 +1,8 @@
+{ pkgs ? import (fetchTarball "https://github.com/NixOS/nixpkgs/archive/994e2ef9e9c70b4dd7257f73452a94e871723685.tar.gz") {} }:
+
+pkgs.mkShell {
+  buildInputs = [
+    pkgs.hugo
+    pkgs.nodejs
+  ];
+}

layouts/_default/baseof.html

@@ -4,130 +4,60 @@
     <meta charset="utf-8" />
     <meta http-equiv="x-ua-compatible" content="ie=edge" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+    {{ with .Description }}
+      <meta name="description" content="{{ . }}" />
+    {{ end }}
     <title>{{ .Title }} - {{ .Site.Title }}</title>
-  {{ $twbscss := resources.Get "styles/bootstrap/bootstrap.scss" | resources.ToCSS }}
+    {{ $twbssass := resources.Get "styles/millironx.css" }}
-  {{ $mycss := resources.Get "styles/main.css" }}
+    {{ $twbssass = $twbssass | resources.PostCSS | minify | resources.PostProcess }}
-  {{ $allcss := slice $twbscss $mycss | resources.Concat "css/bundle.css" }}
+    <link href="{{ $twbssass.RelPermalink }}" rel="stylesheet" />
-  {{ $allcsspure := $allcss | resources.PostCSS (dict "nomap" true) | minify | fingerprint | resources.PostProcess }}
-  <link href="{{ $allcsspure.Permalink }}" rel="stylesheet" />
   </head>
 
   {{ $millironx := resources.Get "graphics/millironx.svg" }}
 
+
   <body>
-    <div class="container-fluid">
+    <header>
-      <div class="row wrapper min-vh-100 flex-column flex-sm-row">
+      <object data="{{ $millironx.RelPermalink }}">
-        <aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1">
+        <img src="{{ $millironx.RelPermalink }}" alt="Milliron X" />
-          <nav
+      </object>
-            class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"
+      <h1 class="font-small-caps">Milliron X</h1>
-          >
+    </header>
-            <div class="container-fluid">
+    <div class="row">
-              <a class="navbar-brand d-block d-md-none" href="#">
+      {{ partial "sidebar" . }}
-                <object
+      <main>
-                  class="d-inline-block align-text-top"
+        {{ block "main" . }}
-                  width="80"
+          {{ .Content }}
-                  height="24"
+        {{ end }}
-                  style="filter: invert(100%)"
+      </main>
-                  data="{{ $millironx.Permalink }}"
-                >
-                  <img src="{{ $millironx.Permalink }}" alt="Milliron X" />
-                </object>
-                &ensp;
-                <span class="font-small-caps font-serif">Milliron X</span>
-              </a>
-              <a
-                href
-                class="navbar-toggler"
-                data-bs-toggle="collapse"
-                data-bs-target=".sidebar"
-              >
-                <span class="navbar-toggler-icon"></span>
-              </a>
-              <div class="collapse navbar-collapse sidebar">
-                <ul
-                  class="flex-column navbar-nav w-100 justify-content-between"
-                >
-                  <li class="nav-item">
-                    <a class="nav-link pl-0" href="/"
-                      ><i class="fad fa-home fa-fw"></i>
-                      <span class="">Home</span></a
-                    >
-                  </li>
-                  <li class="nav-item">
-                    <a class="nav-link pl-0" href="/contact"
-                      ><i class="fad fa-file-signature fa-fw"></i>
-                      <span class="">Contact</span></a
-                    >
-                  </li>
-                  <li class="nav-item">
-                    <a class="nav-link pl-0" href="/academia"
-                      ><i class="fad fa-university fa-fw"></i>
-                      <span class="">Academia</span></a
-                    >
-                  </li>
-                  <li class="nav-item">
-                    <a class="nav-link pl-0" href="/ai">
-                      <i class="fax fa-bull-sperm"></i>
-                      <span class="">Artificial Insemination</span
-                      >
-                    </a>
-                  </li>
-                  <li class="nav-item">
-                    <a class="nav-link pl-0" href="/videos"
-                      ><i class="fad fa-video fa-fw"></i>
-                      <span class="">Videos</span></a
-                    >
-                  </li>
-                  <li class="nav-item">
-                    <a class="nav-link pl-0" href="/websites"
-                      ><i class="fad fa-browser fa-fw"></i>
-                      <span class="">Websites</span></a
-                    >
-                  </li>
-                </ul>
-              </div>
-            </div>
-          </nav>
-        </aside>
-        <main class="col bg-faded py-3 gx-0">
-          <div class="container">
-            <header class="d-none d-sm-none d-md-block text-center">
-              <h1 class="font-serif font-small-caps">
-                <object data="{{ $millironx.Permalink }}">
-                  <img src="{{ $millironx.Permalink }}" alt="Milliron X" />
-                </object>
-                &emsp; Milliron X
-              </h1>
-            </header>
-          </div>
-          {{ block "main" . }}
-          <section class="container-fluid list-main">
-            <div class="container px-5">
-                {{ .Content }}
-            </div>
-          </section>
-          {{ end }}
-        </main>
-      </div>
     </div>
-    <!-- Font Awesome -->
+    <footer>
-    {{ $fontawesome := resources.Get "scripts/fa-icons.js" | js.Build "js/fontawesome.js" | minify | fingerprint }}
+      {{ $brandedbull := resources.Get "graphics/brandedbull.svg" }}
-    <script src="{{ $fontawesome.Permalink }}"></script>
+      {{ $brandedbullsmall := $brandedbull | resources.Minify }}
+      <img src="{{ $brandedbullsmall.RelPermalink }}" height="95rem" />
 
-    <!-- JQuery -->
+      <p>
-    {{ $jquery := resources.Get "scripts/jquery/jquery.min.js" }}
+        &copy; {{ .Date | time.Format "2006" }} Thomas A. Christensen II
-    {{ $jqmaskjs := resources.Get "scripts/jquery-mask-plugin/jquery.mask.min.js" }}
+        <br />
-    {{ $fittextjs := resources.Get "scripts/fittext/jquery.fittext.js" | minify }}
+        Licensed
-    {{ $scrolljs := resources.Get "scripts/scroll-effect.js" | minify }}
+        <a rel="license" href="http://creativecommons.org/licenses/by/4.0/"
-    {{ $maskjs := resources.Get "scripts/phone-masking.js" | minify }}
+          >CC-BY 4.0</a
-    {{ $jquerybundle := slice $jquery $jqmaskjs $fittextjs $scrolljs $maskjs | resources.Concat "js/jquery-bundle.js" | fingerprint }}
+        >
-    <script src="{{ $jquerybundle.Permalink }}"></script>
+        <br />
+        Built with <a href="https://gohugo.io">Hugo</a> v{{ hugo.Version }}
+      </p>
+    </footer>
 
-    <!-- Bootstrap -->
+    {{ with .Params.validation }}
-    {{ $popperjs := resources.Get "scripts/popper/popper.min.js" }}
+      {{- partial "form-validation.html" -}}
-    {{ $twbsjs := resources.Get "scripts/bootstrap/bootstrap.min.js" }}
+    {{ end }}
-    {{ $ttjs := resources.Get "scripts/tooltip-enable.js" | minify }}
+
-    {{ $bootstrapbundle := slice $popperjs $twbsjs $ttjs | resources.Concat "js/bootstrap-bundle.js" | fingerprint }}
+
-    <script src="{{ $bootstrapbundle.Permalink }}"></script>
+    <!-- GoatCounter -->
+    <script
+      data-goatcounter="https://millironx.goatcounter.com/count"
+      async
+      src="//gc.zgo.at/count.js"
+    ></script>
   </body>
 </html>

layouts/_default/list.html

@@ -1,11 +1,91 @@
-
 {{ define "main" }}
-{{ partial "scrolling-image-header" . }}
+  {{ partial "scrolling-image-header" . }}
-<section class="container-fluid list-main">
+  <section>
-  <div class="container px-5">
+    <div>
-    {{ block "content" . }}
+      {{ block "content" . }}
-      {{ .Content }}
+        {{ .Content }}
+      {{ end }}
+    </div>
+
+    {{ range .Pages }}
+      <div class="card">
+        {{ partial "category-button" . }}
+
+        {{ with .Param "fa-thumbnail" }}
+          <div class="card-header">
+            <div class="thumb-icon-wrapper">
+              <span class="thumb-icon-badge">
+                {{- partial "fa.html" . -}}
+              </span>
+            </div>
+          </div>
+        {{ end }}
+
+        {{/* Thumbnail images should be stored as 'thumbnail'.* in the page bundle, but
+          historically they might have been referenced as 'thumbnail' in the front
+          matter, or (even more historically) as 'cardImage'. Use scratch to
+          normalize all these different systems.
+        */}}
+        {{ $bundleGlob := "thumbnail.*" }}
+        {{ $frontThumbGlob := print "images/" (.Params.thumbnail) ".*" }}
+        {{ $frontCardGlob := print "images/" (.Params.cardImage) ".jpg" }}
+        {{ $allThumbnailGlob := print "{" $frontThumbGlob "," $frontCardGlob "," $bundleGlob "}" }}
+        {{ with .Resources.GetMatch $allThumbnailGlob }}
+          {{ $thumbnail := . }}
+          {{ $thumbnailResized := $thumbnail.Resize "600x" }}
+
+
+          <div class="card-header">
+            <img
+              class="img-thumbnail"
+              src="{{ $thumbnailResized.RelPermalink }}"
+              alt="Thumbnail of {{ .Title }}"
+            />
+          </div>
+        {{ end }}
+
+
+        <div class="card-body">
+          {{/* Prefer full-text links over local ones */}}
+          <div class="card-title">
+            {{ $link := default .RelPermalink (index .Params "link") }}
+            <a href="{{ $link }}"><h3>{{ .Title }}</h3></a>
+          </div>
+
+          <div>
+            {{ dateFormat "02 Jan 2006" .Date }}
+          </div>
+
+          {{ range (.GetTerms "people") }}
+            <a
+              href="{{ .RelPermalink }}"
+              class="card-link {{ if eq .LinkTitle "Thomas A. Christensen II" }}
+                bolder
+              {{ end }}"
+              >{{- partial "fa.html" "user" }} {{ .LinkTitle }}</a
+            >
+          {{ end }}
+
+
+          <p class="card-text">
+            {{ .Summary }}
+            <strong
+              ><small
+                ><a href="{{ $link }}">Read&nbsp;more&nbsp;&raquo;</a></small
+              ></strong
+            >
+          </p>
+
+          <div class="card-footer">
+            {{ range (.GetTerms "tags") }}
+              <a href="{{ .RelPermalink }}" class="icon-link card-link"
+                >{{- partial "fa.html" "tag" }} {{ .LinkTitle }}</a
+              >
+            {{ end }}
+          </div>
+        </div>
+      </div>
+      <!-- </card> -->
     {{ end }}
-  </div>
+  </section>
-</section>
 {{ end }}

layouts/_default/single.html

@@ -1,8 +1,3 @@
 {{ define "main" }}
-
+  {{ .Content }}
-<section class="container-fluid list-main">
-  <div class="container px-5">
-{{ .Content }}
-</div>
-</section>
 {{ end }}

layouts/academia/list.html

@@ -1,24 +0,0 @@
-{{ define "main" }}
-  {{ partial "scrolling-image-header" . }}
-  <section class="container-fluid list-main">
-    <div class="container px-5">
-
-
-
-  <h2>Selected Presentations</h2>
-  {{ $featuredpubs := where .Pages ".Params.featured" "==" true }}
-  {{ range $featuredpubs }}
-    {{ .Scratch.Set "showAbstract" true }}
-    {{ partial "academia/list-single.html" . }}
-  {{ end }}
-  <hr />
-  <h2>Other Presentations</h2>
-  {{ $nonfeaturedpubs := where .Pages ".Params.featured" "==" false }}
-  {{ range $nonfeaturedpubs }}
-    {{ partial "academia/list-single.html" . }}
-  {{ end }}
-
-
-    </div>
-  </section>
-{{ end }}

layouts/academia/single.html

@@ -1,27 +1,27 @@
 {{ define "main" }}
-  <section class="container-fluid list-main">
+  <section>
-    <div class="container px-5">
+    <h5>
-      <h5>
+      {{ .Params.journal }}{{ with .Params.location }}: {{ . }}{{ end }}
-        {{ .Params.journal }}{{ with .Params.location }}: {{ . }}{{ end }}
+    </h5>
-      </h5>
+    <h2>{{ .Title }}</h2>
-      <h2>{{ .Title }}</h2>
+    <h3>
-      <h3>
+      <small>
-        <small>
+        {{ range (.GetTerms "people") }}
-          <ul class="list-inline">
+          <a
-            {{ range .Params.authors }}
+            href="{{ .RelPermalink }}"
-              <li class="list-inline-item">{{ . }}</li>
+            class="card-link {{ if eq .LinkTitle "Thomas A. Christensen II" }}
-            {{ end }}
+              bolder
-          </ul>
+            {{ end }}"
-        </small>
+            >{{- partial "fa.html" "user" }} {{ .LinkTitle }}</a
-      </h3>
+          >
-      <h4>{{ .Date | time.Format "January 2, 2006" }}</h4>
+        {{ end }}
-      {{ .Content }}
+      </small>
-      {{ with .Params.link }}
+    </h3>
-        <div class="card border-dark m-3 p-3">
+    <h4>{{ .Date | time.Format "January 2, 2006" }}</h4>
-          <a href="{{ . }}">{{ . }}</a>
+    {{ .Content }}
-          <iframe src="{{ . }}" style="width: 100%; height: 75vh"></iframe>
+    {{ with .Params.link }}
-        </div>
+      <a href="{{ . }}">{{ . }}</a>
-      {{ end }}
+      <iframe src="{{ . }}" style="width: 100%; height: 75vh"></iframe>
-    </div>
+    {{ end }}
   </section>
 {{ end }}

layouts/partials/academia/list-single.html

@@ -1,74 +0,0 @@
-<div class="d-flex py-2">
-  <div class="px-2">
-    {{ if eq .Params.medium "paper" }}
-      {{ .Scratch.Set "fa" "fa-book" }}
-    {{ else if eq .Params.medium "poster" }}
-      {{ .Scratch.Set "fa" "fa-presentation" }}
-    {{ else if eq .Params.medium "thesis" }}
-      {{ .Scratch.Set "fa" "fa-graduation-cap" }}
-    {{ else if eq .Params.medium "presentation" }}
-      {{ .Scratch.Set "fa" "fa-podium" }}
-    {{ else }}
-      {{ .Scratch.Set "fa" "fa-notebook" }}
-    {{ end }}
-
-    {{ $fa := (.Scratch.Get "fa") }}
-
-
-    <h3>
-      <i
-        class="fad fa-fw {{ $fa }}"
-        data-bs-toggle="tooltip"
-        title="{{ humanize .Params.medium }}"
-      ></i>
-    </h3>
-    {{ with .Params.link }}
-      <a
-        class="btn btn-secondary dogear"
-        href="{{ . }}"
-        data-bs-toggle="tooltip"
-        title="Full text"
-        ><i class="fad fa-file-alt"></i
-      ></a>
-    {{ end }}
-  </div>
-  <div class="flex-grow-1 px-2">
-    <h3>
-      <a href="{{ .Permalink }}">
-        {{ .Title }}
-      </a>
-    </h3>
-    {{ $authlist := .Params.authors }}
-    {{ range $idx, $auth := .Params.authors }}
-      {{ if and (eq $idx (sub (len $authlist) 1)) (gt 1 (len $authlist)) }}
-        and
-      {{ end }}
-      {{- if eq $auth "Thomas A. Christensen II" }}
-        <strong>{{ $auth }}</strong>
-      {{- else }}
-        {{ $auth }}
-      {{- end }}
-      {{- if lt $idx (sub (len $authlist) 1) -}}
-        ,
-      {{- end }}
-    {{ end }}
-    <br />
-    {{ .Params.journal }}:
-    {{ .Params.location }}
-    ({{ dateFormat "02 Jan 2006" .Params.date }})
-    <br />
-    {{ with .Params.keywords }}
-      Keywords:
-      {{ range . }}
-        <a href="#">{{ . }}</a>
-      {{ end }}
-      <br />
-    {{ end }}
-    {{ if eq (.Scratch.Get "showAbstract") true }}
-      <details>
-        <summary>Abstract</summary>
-        {{ .Content }}
-      </details>
-    {{ end }}
-  </div>
-</div>

layouts/partials/account.html

@@ -0,0 +1,54 @@
+{{ $icons := dict
+  "chocolatey" "candy-bar"
+  "codeberg" "codeberg"
+  "ebay" "ebay"
+  "epic" "chevrons-down"
+  "google-scholar" "google-scholar"
+  "github" "github"
+  "gitlab" "gitlab"
+  "hacker-news" "hacker-news"
+  "internet-archive" "university"
+  "lutris" "lutris"
+  "matrix" "matrix"
+  "orcid" "orcid"
+  "pandora" "p"
+  "quay" "circle-quarters"
+  "spotify" "spotify"
+  "steam" "steam"
+  "vimeo" "vimeo"
+  "zotero" "zotero"
+}}
+
+{{ $urlBases := dict
+  "chocolatey" "https://community.chocolatey.org/profiles/"
+  "codeberg" "https://codeberg.org/"
+  "ebay" "https://www.ebay.com/usr/"
+  "epid" "#"
+  "google-scholar" "https://scholar.google.com/citations?user="
+  "github" "https://github.com/"
+  "gitlab" "https://gitlab.com/"
+  "hacker-news" "https://news.ycombinator.com/user?id="
+  "internet-archive" "https://archive.org/details/@"
+  "lutris" "https://lutris.net/user/"
+  "matrix" "https://matrix.to/#/"
+  "orcid" "https://orcid.org/"
+  "pandora" "https://www.pandora.com/profile/"
+  "quay" "https://quay.io/user/"
+  "spotify" "https://open.spotify.com/user/"
+  "steam" "https://steamcommunity.com/id/"
+  "vimeo" "https://vimeo.com/"
+  "zotero" "https://www.zotero.org/"
+}}
+
+{{ $icon := index $icons .account }}
+{{ $urlBase := index $urlBases .account }}
+
+{{ $userURL := print $urlBase .username }}
+
+
+<a
+  href="{{ $userURL }}"
+  {{ if .isMe }}rel="me"{{ end }}
+  title="{{ .account | humanize }}: {{ .username }}"
+  >{{ partial "fa.html" $icon }}</a
+>