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Force overwrite of destination fastq.gz

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This commit is contained in:
Thomas A. Christensen II 2021-04-20 14:34:26 -06:00
parent 798e7693bf
commit 2340aa974b
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 1 additions and 1 deletions
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ont/ont-transfer
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@ -89,7 +89,7 @@ for FASTA in ${KEEPERS[@]}; do
find $FOLDERPATH -name "*.fastq" -path "*_pass*barcode$FASTA*" -print0 | xargs -0 -r -L1 -P0 gzip find $FOLDERPATH -name "*.fastq" -path "*_pass*barcode$FASTA*" -print0 | xargs -0 -r -L1 -P0 gzip
# Zip up the copied fastq # Zip up the copied fastq
gzip $FASTQRESULT gzip -f $FASTQRESULT
else else
echo "No suitable files found for Barcode $FASTA, skipping" echo "No suitable files found for Barcode $FASTA, skipping"
fi fi