setup-nextflow/src/main.ts

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import * as core from "@actions/core"
import * as exec from "@actions/exec"
import * as tc from "@actions/tool-cache"
import * as fs from "fs"
import semver from "semver"
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import {
check_cache,
get_nextflow_release,
install_nextflow
} from "./functions"
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import { NextflowRelease } from "./nextflow-release"
import {
pull_latest_stable_release,
pull_releases,
setup_octokit
} from "./octokit-wrapper"
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async function run(): Promise<void> {
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// CAPSULE_LOG leads to a bunch of boilerplate being output to the logs: turn
// it off
core.exportVariable("CAPSULE_LOG", "none")
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// Read in the arguments
const token = core.getInput("token")
const version = core.getInput("version")
const get_all = core.getBooleanInput("all")
const cooldown = Number(core.getInput("cooldown"))
const max_retries = Number(core.getInput("max-retries"))
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// Check the cache for the Nextflow version that matched last time
if (check_cache(version)) {
return
}
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// Setup the API
const octokit = await setup_octokit(token, cooldown, max_retries)
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// Get the release info for the desired release
let release = {} as NextflowRelease
let resolved_version = ""
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try {
if (version === "latest" || version === "latest-stable") {
release = await pull_latest_stable_release(octokit)
} else {
const release_iterator = pull_releases(octokit)
release = await get_nextflow_release(version, release_iterator)
}
resolved_version = release.versionNumber
core.info(
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`Input version '${version}' resolved to Nextflow ${release.versionNumber}`
)
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} catch (e: unknown) {
if (e instanceof Error) {
core.setFailed(
`Could not retrieve Nextflow release matching ${version}.\n${e.message}`
)
}
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}
try {
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// Download Nextflow and add it to path
if (!check_cache(resolved_version)) {
const nf_install_path = await install_nextflow(release, get_all)
const cleaned_version = String(semver.clean(resolved_version, true))
const nf_path = await tc.cacheDir(
nf_install_path,
"nextflow",
cleaned_version
)
core.addPath(nf_path)
core.info(`Downloaded \`nextflow\` to ${nf_path} and added to PATH`)
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core.debug(`Added Nextflow to cache: ${nf_path}`)
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fs.rmdirSync(nf_install_path, { recursive: true })
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}
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} catch (e: unknown) {
if (e instanceof Error) {
core.setFailed(e.message)
}
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}
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// Run Nextflow so it downloads its dependencies
try {
await exec.exec("nextflow", ["help"])
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} catch (e: unknown) {
if (e instanceof Error) {
// fail workflow if Nextflow run does not succeed
core.setFailed(`Could not run 'nextflow help'. Error: ${e.message}`)
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}
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}
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}
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run()