| .vscode | ||
| assembly_improvement | ||
| clique-snv | ||
| htslib | ||
| julia | ||
| minimap_plus | ||
| pigz | ||
| ray | ||
| samtools | ||
| shorah | ||
| varscan | ||
| velvet | ||
| .gitattributes | ||
| .gitignore | ||
| LICENSE.md | ||
| README.md | ||
| singularity-builds-artwork.svg | ||
Singularity Builds
Definition files for building Nextflow-compatible Singularity container
images to use in bioinformatics pipelines. Programs get containers in this
repository if I can't find an up-to-date container that also has Nextflow's
dependencies installed (usually bash and ps are the culprits). All of these
images are available on the Sylabs Cloud Library for easy access.
Get started
-
Enter the container, e.g.
singularity shell library://millironx/default/julia:latest -
Execute commands, e.g.
Singularity> julia _ _ _ _(_)_ | Documentation: https://docs.julialang.org (_) | (_) (_) | _ _ _| |_ __ _ | Type "?" for help, "]?" for Pkg help. | | | | | | |/ _` | | | | |_| | | | (_| | | Version 1.6.1 (2021-04-23) _/ |\__'_|_|_|\__'_| | Official https://julialang.org/ release |__/ | julia>
Where else to find container images
State Public Health Bioinformatics (StaPH-B) Dockerfiles
🌐 Website - :octocat: GitHub - 🐳 Docker hub
All of these images are tested for Nextflow and Singularity compatability, and are updated on a regular basis. I've even contributed to their repository.
Biocontainers Registry
🌐 Website - :octocat: GitHub - 🐳 Docker hub
Most of these images are already in Singularity format, and there are a lot of tools for the picking here.
Artwork
Artwork was designed by @MillironX by remixing:
- DNA by Scout (Public domain)
- Cardboard box by Rushtini (Public domain)
- Pointing Boy in Baseball Cap by ruthirsty (Public domain)
- Singularity Logo by Sylabs (BSD 3-Clause)
