singularity-builds/shorah/README.md

# ShoRAH

[![Container source](https://img.shields.io/static/v1?label=Container%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/MillironX/singularity-builds/tree/master/shorah)
[![ShoRAH source](https://img.shields.io/static/v1?label=ShoRAH%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/cbg-ethz/shorah)
[![Version 1.99.2](https://img.shields.io/static/v1?label=Latest%20version&message=1.99.2&color=yellowgreen&logo=linuxcontainers&style=flat-square)](https://cloud.sylabs.io/library/millironx/default/shorah)
[![Docs](https://img.shields.io/static/v1?label=Docs&message=web&color=blue&style=flat-square)](https://github.com/cbg-ethz/shorah)
[![Alpine base](https://img.shields.io/static/v1?label=Base%20image&message=Alpine&color=0d597f&logo=alpinelinux&style=flat-square)](https://www.alpinelinux.org/)

ShoRAH is an open source project for the analysis of next generation sequencing data. It is designed to analyse genetically heterogeneous samples. Its tools are written in different programming languages and provide error correction, haplotype reconstruction and estimation of the frequency of the different genetic variants present in a mixed sample.

## Tools installed

### ShoRAH

- `shorah`
- `b2w`
- `diri_sampler`
- `fil`