singularity-builds/clique-snv/README.md

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# CliqueSNV
[![Container source](https://img.shields.io/static/v1?label=Container%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/MillironX/singularity-builds/tree/master/clique-snv)
[![CliqueSNV source](https://img.shields.io/static/v1?label=CliqueSNV%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/vtsyvina/CliqueSNV)
[![Version 2.0.2](https://img.shields.io/static/v1?label=Latest%20version&message=2.0.2&color=yellowgreen&logo=linuxcontainers&style=flat-square)](https://cloud.sylabs.io/library/millironx/default/clique-snv)
[![Docs](https://img.shields.io/static/v1?label=Docs&message=README&color=blue&style=flat-square)](https://github.com/vtsyvina/CliqueSNV/blob/master/README.md)
[![Alpine base](https://img.shields.io/static/v1?label=Base%20image&message=Alpine&color=0d597f&logo=alpinelinux&style=flat-square)](https://www.alpinelinux.org/)
CliqueSNV can identify minority haplotypes based on extracting pairs of statistically linked mutations from noisy reads.
## Tools installed
### CliqueSNV
- `java`
- `clique-snv` as alias for `java -jar clique-snv.jar ...`