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15 lines
1.2 KiB
Markdown
15 lines
1.2 KiB
Markdown
# Samtools
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[](https://github.com/MillironX/singularity-builds/tree/master/samtools)
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[](https://github.com/samtools/samtools)
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[](https://cloud.sylabs.io/library/millironx/default/samtools)
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[](https://www.htslib.org/doc/samtools.html)
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[](https://www.alpinelinux.org/)
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Samtools is a set of utilities that manipulate alignments in the SAM (Sequence Alignment/Map), BAM, and CRAM formats. It converts between the formats, does sorting, merging and indexing, and can retrieve reads in any regions swiftly.
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## Tools installed
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### samtools
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- `samtools`
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