1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-22 15:39:55 +00:00
taxprofiler/modules.json

219 lines
9.9 KiB
JSON
Raw Normal View History

{
"name": "nf-core/taxprofiler",
"homePage": "https://github.com/nf-core/taxprofiler",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"adapterremoval": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "ce7cf27e377fdacf7ebe8e75903ec70405ea1659",
"installed_by": ["modules"]
},
"bbmap/bbduk": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
2022-10-14 08:52:17 +00:00
"bracken/bracken": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "8cab56516076b23c6f8eb1ac20ba4ce9692c85e1",
"installed_by": ["modules"]
2022-10-14 08:52:17 +00:00
},
"bracken/combinebrackenoutputs": {
"branch": "master",
"git_sha": "9c87d5fdad182590a370ea43a4ecebd200a6f6fb",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"centrifuge/centrifuge": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"centrifuge/kreport": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"diamond/blastx": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
2022-10-18 15:43:16 +00:00
"falco": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "fc959214036403ad83efe7a41d43d0606c445cda",
2022-12-15 12:27:41 +00:00
"installed_by": ["modules"],
"patch": "modules/nf-core/falco/falco.diff"
2022-10-18 15:43:16 +00:00
},
"fastp": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "1e49f31e93c56a3832833eef90a02d3cde5a3f7e",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"filtlong": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"kaiju/kaiju": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"kaiju/kaiju2krona": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"kaiju/kaiju2table": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"kraken2/kraken2": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"krakentools/combinekreports": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"krakentools/kreport2krona": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"krakenuniq/preloadedkrakenuniq": {
"branch": "master",
2022-12-20 19:08:12 +00:00
"git_sha": "a6eb17f65b3ee5761c25c075a6166c9f76733cee",
2022-12-09 09:27:50 +00:00
"installed_by": ["modules"]
},
"krona/ktimporttaxonomy": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"krona/ktimporttext": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"malt/run": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "6d9712f03ec2de8264a50ee4541a617e1e063b51",
"installed_by": ["modules"]
},
"megan/rma2info": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"metaphlan3/mergemetaphlantables": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"metaphlan3/metaphlan3": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"minimap2/index": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"motus/merge": {
"branch": "master",
2022-12-12 14:42:01 +00:00
"git_sha": "3fce766123e71e82fb384db7d07b59180baa9ee9",
2022-12-09 09:27:50 +00:00
"installed_by": ["modules"]
},
"motus/profile": {
"branch": "master",
2022-12-12 14:42:01 +00:00
"git_sha": "3fce766123e71e82fb384db7d07b59180baa9ee9",
2022-12-09 09:27:50 +00:00
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
2022-11-01 16:34:37 +00:00
"porechop/porechop": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "2a4e85eb81875a572bb58133e37f84ba3cc484d7",
"installed_by": ["modules"]
},
"prinseqplusplus": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"samtools/bam2fq": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
2022-10-28 09:40:50 +00:00
"samtools/index": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
2022-10-28 09:40:50 +00:00
},
"samtools/stats": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
2022-10-28 09:40:50 +00:00
},
"samtools/view": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
2022-12-09 09:27:50 +00:00
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"installed_by": ["modules"]
}
}
}
}
}
}