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report_comment : >
This report has been generated by the <a href="https://github.com/nf-core/taxprofiler" target="_blank">nf-core/taxprofiler</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/taxprofiler" target="_blank">documentation</a>.
report_section_order :
software_versions :
order : -1000
"nf-core-taxprofiler-summary" :
order : -1001
export_plots : true
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custom_logo : "nf-core-taxprofiler_logo_custom_light.png"
custom_logo_url : https://nf-co.re/taxprofiler
custom_logo_title : "nf-core/taxprofiler"
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run_modules :
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- fastqc
- adapterRemoval
- fastp
- bowtie2
- kraken
- malt
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#extra_fn_clean_exts:
# - '_fastp'
# - '.pe.settings'
# - '.se.settings'
top_modules :
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- "fastqc" :
name : "FastQC (pre-Trimming)"
path_filters :
- "*raw_*fastqc.zip"
- "fastp"
- "adapterRemoval"
- "fastqc" :
name : "FastQC (post-Trimming)"
path_filters :
- "*raw_*processed.zip"
- "kraken" :
name : "Kraken"
path_filters :
- "*.kraken2.report.txt"
- "kraken" :
name : "Centrifuge"
anchor : "centrifuge"
target : "Centrifuge"
doi : "10.1101/gr.210641.116"
info : "Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index."
path_filters :
- "*.centrifuge.txt"
