2022-02-18 06:55:14 +00:00
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{
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"name": "nf-core/taxprofiler",
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"homePage": "https://github.com/nf-core/taxprofiler",
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"repos": {
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"nf-core/modules": {
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2022-09-08 06:08:36 +00:00
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"git_url": "https://github.com/nf-core/modules.git",
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"modules": {
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"adapterremoval": {
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"branch": "master",
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"git_sha": "879d42c5e28661fe0a5e744c9e2c515868f9e08a"
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},
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"bbmap/bbduk": {
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"branch": "master",
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"git_sha": "848ee9a215d02d80be033bfa60881700f2bd914c"
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},
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"bowtie2/align": {
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"branch": "master",
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"git_sha": "848ee9a215d02d80be033bfa60881700f2bd914c"
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},
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"bowtie2/build": {
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"branch": "master",
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"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
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},
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"cat/fastq": {
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"branch": "master",
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"git_sha": "b034029b59b1198075da8019074bc02051a6100e"
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},
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"centrifuge/centrifuge": {
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"branch": "master",
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"git_sha": "d2726fcf75063960f06b36d2229a4c0966614108"
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},
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"centrifuge/kreport": {
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"branch": "master",
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"git_sha": "734d0db6079a4aa43b6509b207e5d6feb35d4838"
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},
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"custom/dumpsoftwareversions": {
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"branch": "master",
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"git_sha": "5e7b1ef9a5a2d9258635bcbf70fcf37dacd1b247"
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},
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"diamond/blastx": {
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"branch": "master",
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"git_sha": "3531824af826c16cd252bc5aa82ae169b244ebaa"
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},
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"fastp": {
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"branch": "master",
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2022-09-08 12:25:23 +00:00
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"git_sha": "7e8ad566883449e7939062b5e2bcf53fc1e0002f",
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"patch": "modules/nf-core/modules/fastp/fastp.diff"
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2022-09-08 06:08:36 +00:00
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},
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"fastqc": {
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"branch": "master",
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"git_sha": "49b18b1639f4f7104187058866a8fab33332bdfe"
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},
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"filtlong": {
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"branch": "master",
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"git_sha": "957cb9b83668075f4af101fc99502908cca487e3"
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},
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"gunzip": {
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"branch": "master",
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"git_sha": "fa37e0662690c4ec4260dae282fbce08777503e6"
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},
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"kaiju/kaiju": {
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"branch": "master",
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"git_sha": "8856f127c58f6af479128be8b8df4d42e442ddbe"
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},
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"kaiju/kaiju2krona": {
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"branch": "master",
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"git_sha": "2f0b19240430de6807b1232e6d9d0e8084e8a28f"
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},
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"kaiju/kaiju2table": {
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"branch": "master",
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"git_sha": "538dbac98ba9c8f799536cd5a617195501439457"
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},
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"kraken2/kraken2": {
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"branch": "master",
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"git_sha": "409a308ba46284d8ebb48c2c1befd6f6433db3f7"
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},
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"krakentools/kreport2krona": {
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"branch": "master",
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"git_sha": "233fa70811a03a4cecb2ece483b5c8396e2cee1d"
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},
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"krona/ktimporttaxonomy": {
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"branch": "master",
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"git_sha": "0e9fd9370ad1845870b8a9c63fcc47d999a1739e"
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},
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"krona/ktimporttext": {
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"branch": "master",
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"git_sha": "cdefbec66999c0b49d8bfeea9d6f9d19056635a2"
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},
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"malt/run": {
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"branch": "master",
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"git_sha": "be8d7b3293cac26cc63e4dbfb364deb8ed6ec7e5"
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},
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"megan/rma2info": {
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"branch": "master",
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"git_sha": "2d38566eca4cc15142b2ffa7c11837569b39aece"
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},
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2022-09-09 11:57:06 +00:00
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"metaphlan3/mergemetaphlantables": {
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"branch": "master",
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"git_sha": "940d7fe9d63962e0e2ba0987e2893fb0aff832e3"
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},
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2022-09-08 06:08:36 +00:00
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"metaphlan3/metaphlan3": {
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"branch": "master",
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"git_sha": "940d7fe9d63962e0e2ba0987e2893fb0aff832e3"
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},
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"minimap2/align": {
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"branch": "master",
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"git_sha": "1a5a9e7b4009dcf34e6867dd1a5a1d9a718b027b"
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},
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"minimap2/index": {
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"branch": "master",
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"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
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},
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"motus/merge": {
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"branch": "master",
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"git_sha": "b02e648c221e1da17cb589eefe297e61ec9e9c49"
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},
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"motus/profile": {
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"branch": "master",
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"git_sha": "b6ed584443ad68ac41e6975994139454a4f23c18"
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},
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"multiqc": {
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"branch": "master",
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2022-09-08 10:49:38 +00:00
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"git_sha": "16eee433b87b303bda650131ac5a0b1ad725e166"
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2022-09-08 06:08:36 +00:00
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},
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"porechop": {
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"branch": "master",
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"git_sha": "b78e19b9dae3671db2c7d4346fe04452c1debfab"
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},
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"prinseqplusplus": {
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"branch": "master",
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"git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b"
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},
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"samtools/bam2fq": {
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"branch": "master",
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"git_sha": "5510ea39fe638594bc26ac34cadf4a84bf27d159"
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},
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"samtools/view": {
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"branch": "master",
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"git_sha": "5e7b1ef9a5a2d9258635bcbf70fcf37dacd1b247"
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},
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"untar": {
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"branch": "master",
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"git_sha": "5e7b1ef9a5a2d9258635bcbf70fcf37dacd1b247"
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}
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2022-02-18 06:55:14 +00:00
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}
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}
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}
|
2022-05-25 12:03:23 +00:00
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}
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