2022-02-18 06:55:14 +00:00
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<html>
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2022-03-23 13:57:56 +00:00
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<head>
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<meta charset="utf-8" />
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<meta http-equiv="X-UA-Compatible" content="IE=edge" />
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<meta name="viewport" content="width=device-width, initial-scale=1" />
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2022-02-18 06:55:14 +00:00
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2022-03-23 13:57:56 +00:00
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<!-- prettier-ignore -->
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<meta name="description" content="nf-core/taxprofiler: Taxonomic profiling of shotgun metagenomic data" />
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<title>nf-core/taxprofiler Pipeline Report</title>
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</head>
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<body>
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<div style="font-family: Helvetica, Arial, sans-serif; padding: 30px; max-width: 800px; margin: 0 auto">
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<img src="cid:nfcorepipelinelogo" />
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2022-02-18 06:55:14 +00:00
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2022-03-23 13:57:56 +00:00
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<h1>nf-core/taxprofiler v${version}</h1>
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<h2>Run Name: $runName</h2>
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2022-02-18 06:55:14 +00:00
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2022-03-23 13:57:56 +00:00
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<% if (!success){ out << """
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<div
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style="
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color: #a94442;
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background-color: #f2dede;
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border-color: #ebccd1;
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padding: 15px;
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margin-bottom: 20px;
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border: 1px solid transparent;
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border-radius: 4px;
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"
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>
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<h4 style="margin-top: 0; color: inherit">nf-core/taxprofiler execution completed unsuccessfully!</h4>
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2022-02-18 06:55:14 +00:00
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<p>The exit status of the task that caused the workflow execution to fail was: <code>$exitStatus</code>.</p>
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<p>The full error message was:</p>
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<pre style="white-space: pre-wrap; overflow: visible; margin-bottom: 0">${errorReport}</pre>
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</div>
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""" } else { out << """
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<div
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style="
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color: #3c763d;
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background-color: #dff0d8;
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border-color: #d6e9c6;
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padding: 15px;
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margin-bottom: 20px;
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border: 1px solid transparent;
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border-radius: 4px;
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"
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>
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2022-02-18 06:55:14 +00:00
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nf-core/taxprofiler execution completed successfully!
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</div>
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""" } %>
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2022-02-18 06:55:14 +00:00
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2022-03-23 13:57:56 +00:00
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<p>The workflow was completed at <strong>$dateComplete</strong> (duration: <strong>$duration</strong>)</p>
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<p>The command used to launch the workflow was as follows:</p>
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<pre
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style="
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white-space: pre-wrap;
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overflow: visible;
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background-color: #ededed;
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padding: 15px;
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border-radius: 4px;
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margin-bottom: 30px;
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"
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>
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$commandLine</pre
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>
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2022-02-18 06:55:14 +00:00
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2022-03-23 13:57:56 +00:00
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<h3>Pipeline Configuration:</h3>
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<table
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style="
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width: 100%;
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max-width: 100%;
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border-spacing: 0;
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border-collapse: collapse;
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border: 0;
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margin-bottom: 30px;
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"
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>
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<tbody style="border-bottom: 1px solid #ddd">
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<% out << summary.collect{ k,v -> "
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<tr>
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<th
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style="
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text-align: left;
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padding: 8px 0;
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line-height: 1.42857143;
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vertical-align: top;
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border-top: 1px solid #ddd;
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"
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>
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$k
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</th>
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<td
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style="
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text-align: left;
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padding: 8px;
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line-height: 1.42857143;
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vertical-align: top;
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border-top: 1px solid #ddd;
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"
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>
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<pre style="white-space: pre-wrap; overflow: visible">$v</pre>
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</td>
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</tr>
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" }.join("\n") %>
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</tbody>
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</table>
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2022-02-18 06:55:14 +00:00
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2022-03-23 13:57:56 +00:00
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<p>nf-core/taxprofiler</p>
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<p><a href="https://github.com/nf-core/taxprofiler">https://github.com/nf-core/taxprofiler</a></p>
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</div>
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</body>
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2022-02-18 06:55:14 +00:00
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</html>
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