mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-10 23:03:10 +00:00
111 lines
3.3 KiB
HTML
111 lines
3.3 KiB
HTML
<html>
|
|
<head>
|
|
<meta charset="utf-8" />
|
|
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
|
|
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
|
|
|
<!-- prettier-ignore -->
|
|
<meta name="description" content="nf-core/taxprofiler: Taxonomic profiling of shotgun metagenomic data" />
|
|
<title>nf-core/taxprofiler Pipeline Report</title>
|
|
</head>
|
|
<body>
|
|
<div style="font-family: Helvetica, Arial, sans-serif; padding: 30px; max-width: 800px; margin: 0 auto">
|
|
<img src="cid:nfcorepipelinelogo" />
|
|
|
|
<h1>nf-core/taxprofiler v${version}</h1>
|
|
<h2>Run Name: $runName</h2>
|
|
|
|
<% if (!success){ out << """
|
|
<div
|
|
style="
|
|
color: #a94442;
|
|
background-color: #f2dede;
|
|
border-color: #ebccd1;
|
|
padding: 15px;
|
|
margin-bottom: 20px;
|
|
border: 1px solid transparent;
|
|
border-radius: 4px;
|
|
"
|
|
>
|
|
<h4 style="margin-top: 0; color: inherit">nf-core/taxprofiler execution completed unsuccessfully!</h4>
|
|
<p>The exit status of the task that caused the workflow execution to fail was: <code>$exitStatus</code>.</p>
|
|
<p>The full error message was:</p>
|
|
<pre style="white-space: pre-wrap; overflow: visible; margin-bottom: 0">${errorReport}</pre>
|
|
</div>
|
|
""" } else { out << """
|
|
<div
|
|
style="
|
|
color: #3c763d;
|
|
background-color: #dff0d8;
|
|
border-color: #d6e9c6;
|
|
padding: 15px;
|
|
margin-bottom: 20px;
|
|
border: 1px solid transparent;
|
|
border-radius: 4px;
|
|
"
|
|
>
|
|
nf-core/taxprofiler execution completed successfully!
|
|
</div>
|
|
""" } %>
|
|
|
|
<p>The workflow was completed at <strong>$dateComplete</strong> (duration: <strong>$duration</strong>)</p>
|
|
<p>The command used to launch the workflow was as follows:</p>
|
|
<pre
|
|
style="
|
|
white-space: pre-wrap;
|
|
overflow: visible;
|
|
background-color: #ededed;
|
|
padding: 15px;
|
|
border-radius: 4px;
|
|
margin-bottom: 30px;
|
|
"
|
|
>
|
|
$commandLine</pre
|
|
>
|
|
|
|
<h3>Pipeline Configuration:</h3>
|
|
<table
|
|
style="
|
|
width: 100%;
|
|
max-width: 100%;
|
|
border-spacing: 0;
|
|
border-collapse: collapse;
|
|
border: 0;
|
|
margin-bottom: 30px;
|
|
"
|
|
>
|
|
<tbody style="border-bottom: 1px solid #ddd">
|
|
<% out << summary.collect{ k,v -> "
|
|
<tr>
|
|
<th
|
|
style="
|
|
text-align: left;
|
|
padding: 8px 0;
|
|
line-height: 1.42857143;
|
|
vertical-align: top;
|
|
border-top: 1px solid #ddd;
|
|
"
|
|
>
|
|
$k
|
|
</th>
|
|
<td
|
|
style="
|
|
text-align: left;
|
|
padding: 8px;
|
|
line-height: 1.42857143;
|
|
vertical-align: top;
|
|
border-top: 1px solid #ddd;
|
|
"
|
|
>
|
|
<pre style="white-space: pre-wrap; overflow: visible">$v</pre>
|
|
</td>
|
|
</tr>
|
|
" }.join("\n") %>
|
|
</tbody>
|
|
</table>
|
|
|
|
<p>nf-core/taxprofiler</p>
|
|
<p><a href="https://github.com/nf-core/taxprofiler">https://github.com/nf-core/taxprofiler</a></p>
|
|
</div>
|
|
</body>
|
|
</html>
|