millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-25 10:29:54 +00:00
Code Issues Releases Packages Activity

Add unclassified and verbose flags to kaiju2krona

Browse source
This commit is contained in:
Thomas A. Christensen II 2022-06-27 13:39:42 -05:00
parent 4de43040a3
commit 069370db86
Signed by: millironx
GPG key ID: 139C07724802BC5D
1 changed files with 4 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
conf/modules.config
View file

@ -351,6 +351,10 @@ process {
] ]
} }
withName: KAIJU_KAIJU2KRONA {
ext.args = '-v -u'
}
withName: DIAMOND_BLASTX { withName: DIAMOND_BLASTX {
ext.args = { "${meta.db_params}" } ext.args = { "${meta.db_params}" }
ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" } ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }