Prettier

conf/modules.config

@@ -208,4 +208,12 @@ process {
         ]
     }
 
+    withName: MULTIQC {
+        publishDir = [
+            path: { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" },
+            mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
+        ]
+    }
+
 }

workflows/taxprofiler.nf

@@ -165,7 +165,6 @@ workflow TAXPROFILER {
 
     ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc )
 
-
     // TODO create multiQC module for metaphlan
     MULTIQC (
         ch_multiqc_files.collect()