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This commit is contained in:
James Fellows Yates 2022-04-10 06:44:10 +02:00
parent ecf0eea4f9
commit 082093f3de
2 changed files with 8 additions and 1 deletions
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8
conf/modules.config
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@ -208,4 +208,12 @@ process {
] ]
} }
withName: MULTIQC {
publishDir = [
path: { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" },
mode: params.publish_dir_mode,
saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
]
}
} }

1
workflows/taxprofiler.nf
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@ -165,7 +165,6 @@ workflow TAXPROFILER {
ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc ) ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc )
// TODO create multiQC module for metaphlan // TODO create multiQC module for metaphlan
MULTIQC ( MULTIQC (
ch_multiqc_files.collect() ch_multiqc_files.collect()