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2 changed files with 8 additions and 1 deletions
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@ -208,4 +208,12 @@ process {
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]
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}
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withName: MULTIQC {
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publishDir = [
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path: { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" },
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mode: params.publish_dir_mode,
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saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
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]
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}
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}
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@ -165,7 +165,6 @@ workflow TAXPROFILER {
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ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc )
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// TODO create multiQC module for metaphlan
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MULTIQC (
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ch_multiqc_files.collect()
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