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Fix input channels to kraken2

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This commit is contained in:
James Fellows Yates 2022-03-26 06:45:16 +01:00
parent 000f129dab
commit 120382f51d
1 changed files with 6 additions and 6 deletions
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6
workflows/taxprofiler.nf
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@ -171,7 +171,7 @@ workflow TAXPROFILER {
[ temp_meta, it[1], db ] [ temp_meta, it[1], db ]
} }
.groupTuple(by: [0,2]) .groupTuple(by: [0,2])
.dump(tag: "input for malt") .dump(tag: "input_for_malt")
.multiMap { .multiMap {
it -> it ->
reads: [ it[0], it[1].flatten() ] reads: [ it[0], it[1].flatten() ]
@ -180,10 +180,10 @@ workflow TAXPROFILER {
// We can run Kraken2 one-by-one sample-wise // We can run Kraken2 one-by-one sample-wise
ch_input_for_kraken2 = ch_input_for_profiling.kraken2 ch_input_for_kraken2 = ch_input_for_profiling.kraken2
.dump(tag: "input for kraken") .dump(tag: "input_for_kraken")
.multiMap { .multiMap {
it -> it ->
reads: [ it[0] + it[2], it[1] ] reads: [ it[0] + it[2], it[1].flatten() ]
db: it[3] db: it[3]
} }