millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-13 07:43:08 +00:00
Code Issues Releases Packages Activity

Apply suggestions from code review

Browse source
This commit is contained in:
James A. Fellows Yates 2022-03-25 15:32:56 +01:00 committed by GitHub
parent ede362dbf9
commit 000f129dab
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 4 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
subworkflows/local/shortread_preprocessing.nf
View file

@ -29,12 +29,11 @@ workflow SHORTREAD_PREPROCESSING {
ch_processed_reads = reads
}
//FASTQC_PROCESSED ( ch_processed_reads )
//ch_versions = ch_versions.mix( FASTQC_PROCESSED.out.versions )
//ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip.collect{it[1]} )
FASTQC_PROCESSED ( ch_processed_reads )
ch_versions = ch_versions.mix( FASTQC_PROCESSED.out.versions )
ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip.collect{it[1]} )
emit:
// TODO: problem, this is being exported as a multi-channel output? This is why FASTQC is broken
reads = ch_processed_reads // channel: [ val(meta), [ reads ] ]
versions = ch_versions // channel: [ versions.yml ]
mqc = ch_multiqc_files