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Merge pull request #224 from nf-core/revert-metaphlan-nanopore-filter [skip ci]
Remove metaphlan3 nanopore filter as _sometimes_ it can work
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commit
2cbb56194a
1 changed files with 0 additions and 2 deletions
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@ -203,8 +203,6 @@ workflow PROFILING {
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.filter{
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.filter{
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample ${it[0].id}."
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample ${it[0].id}."
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!it[0].is_fasta
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!it[0].is_fasta
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if (it[0].instrument_platform == 'OXFORD_NANOPORE') log.warn "[nf-core/taxprofiler] MetaPhlAn3 has not been evaluated for Nanopore data. Skipping MetaPhlAn3 for sample ${it[0].id}."
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!it[0].instrument_platform == 'OXFORD_NANOPORE'
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}
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}
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.multiMap {
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.multiMap {
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it ->
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it ->
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