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Update CAT_FASTQ module

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This commit is contained in:
James Fellows Yates 2023-05-02 14:03:44 +02:00
parent 87fd5f72d0
commit 2e980f1d15
3 changed files with 4 additions and 3 deletions
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2
modules.json
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@ -37,7 +37,7 @@
}, },
"cat/fastq": { "cat/fastq": {
"branch": "master", "branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c", "git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
"installed_by": ["modules"] "installed_by": ["modules"]
}, },
"centrifuge/centrifuge": { "centrifuge/centrifuge": {

2
modules/nf-core/cat/fastq/main.nf generated
View file

@ -5,7 +5,7 @@ process CAT_FASTQ {
conda "conda-forge::sed=4.7" conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
'ubuntu:20.04' }" 'docker.io/ubuntu:20.04' }"
input: input:
tuple val(meta), path(reads, stageAs: "input*/*") tuple val(meta), path(reads, stageAs: "input*/*")

3
modules/nf-core/cat/fastq/meta.yml generated
View file

@ -1,6 +1,7 @@
name: cat_fastq name: cat_fastq
description: Concatenates fastq files description: Concatenates fastq files
keywords: keywords:
- cat
- fastq - fastq
- concatenate - concatenate
tools: tools:
@ -16,7 +17,7 @@ input:
Groovy Map containing sample information Groovy Map containing sample information
e.g. [ id:'test', single_end:false ] e.g. [ id:'test', single_end:false ]
- reads: - reads:
type: list type: file
description: | description: |
List of input FastQ files to be concatenated. List of input FastQ files to be concatenated.
output: output: