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Update CAT_FASTQ module

This commit is contained in:
James Fellows Yates 2023-05-02 14:03:44 +02:00
parent 87fd5f72d0
commit 2e980f1d15
3 changed files with 4 additions and 3 deletions

View file

@ -37,7 +37,7 @@
},
"cat/fastq": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
"installed_by": ["modules"]
},
"centrifuge/centrifuge": {

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@ -5,7 +5,7 @@ process CAT_FASTQ {
conda "conda-forge::sed=4.7"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
'ubuntu:20.04' }"
'docker.io/ubuntu:20.04' }"
input:
tuple val(meta), path(reads, stageAs: "input*/*")

View file

@ -1,6 +1,7 @@
name: cat_fastq
description: Concatenates fastq files
keywords:
- cat
- fastq
- concatenate
tools:
@ -16,7 +17,7 @@ input:
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: list
type: file
description: |
List of input FastQ files to be concatenated.
output: