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Update CAT_FASTQ module
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parent
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commit
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3 changed files with 4 additions and 3 deletions
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@ -37,7 +37,7 @@
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},
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"cat/fastq": {
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"branch": "master",
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"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
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"git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71",
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"installed_by": ["modules"]
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},
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"centrifuge/centrifuge": {
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2
modules/nf-core/cat/fastq/main.nf
generated
2
modules/nf-core/cat/fastq/main.nf
generated
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@ -5,7 +5,7 @@ process CAT_FASTQ {
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conda "conda-forge::sed=4.7"
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
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'ubuntu:20.04' }"
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'docker.io/ubuntu:20.04' }"
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input:
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tuple val(meta), path(reads, stageAs: "input*/*")
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3
modules/nf-core/cat/fastq/meta.yml
generated
3
modules/nf-core/cat/fastq/meta.yml
generated
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@ -1,6 +1,7 @@
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name: cat_fastq
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description: Concatenates fastq files
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keywords:
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- cat
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- fastq
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- concatenate
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tools:
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@ -16,7 +17,7 @@ input:
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: list
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type: file
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description: |
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List of input FastQ files to be concatenated.
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output:
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