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Standardise CI execution
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1 changed files with 4 additions and 2 deletions
6
.github/workflows/ci.yml
vendored
6
.github/workflows/ci.yml
vendored
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@ -98,5 +98,7 @@ jobs:
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echo 'motus,db_mOTU,,db_mOTU' >> 'database_motus.csv'
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echo 'motus,db_mOTU,,db_mOTU' >> 'database_motus.csv'
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- name: Run pipeline with test data
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- name: Run pipeline with test data
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run: |
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uses: Wandalen/wretry.action@v1.0.11
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nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv
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with:
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command: nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv
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attempt_limit: 3
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