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Standardise CI execution

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James A. Fellows Yates 2022-09-04 14:02:54 +00:00
parent 8456f934ed
commit 331231ea28
1 changed files with 4 additions and 2 deletions
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6
.github/workflows/ci.yml vendored
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@ -98,5 +98,7 @@ jobs:
echo 'motus,db_mOTU,,db_mOTU' >> 'database_motus.csv' echo 'motus,db_mOTU,,db_mOTU' >> 'database_motus.csv'
- name: Run pipeline with test data - name: Run pipeline with test data
run: | uses: Wandalen/wretry.action@v1.0.11
nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv with:
command: nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv
attempt_limit: 3