millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-13 07:33:08 +00:00
Code Issues Releases Packages Activity

Update docs/output.md

Browse source 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
This commit is contained in:
Sofia Stamouli 2023-01-11 16:50:06 +01:00 committed by GitHub
parent a49a907ad1
commit 33bce738f5
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 15 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

15
docs/output.md
View file

@ -332,6 +332,21 @@ The main taxonomic profiling file from MetaPhlAn3 is the `*_profile.txt` file. T
- `<sample_id>.out`
</details>
### Krona
[Krona](https://github.com/marbl/Krona) is Krona allows the exploration of (metagenomic) hierarchical data with interactive zooming, multi-layered pie charts.
Krona charts will be generated by the pipeline for supported tools (Kraken2, Centrifuge, Kaiju, and MALT)
<details markdown="1">
<summary>Output files</summary>
- `krona/`
- `<tool_name>_<db_name>.html`: per-tool/per-database interactive HTML file containing hierarchical piecharts
</details>
The resulting HTML files can be loaded into your web browser for exploration. Each file will have a dropdown to allow you to switch between each sample aligned against the given database of the tool.
### MultiQC