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Update docs/output.md

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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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Sofia Stamouli 2023-01-11 16:50:06 +01:00 committed by GitHub
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@ -332,6 +332,21 @@ The main taxonomic profiling file from MetaPhlAn3 is the `*_profile.txt` file. T
- `<sample_id>.out` - `<sample_id>.out`
</details> </details>
### Krona
[Krona](https://github.com/marbl/Krona) is Krona allows the exploration of (metagenomic) hierarchical data with interactive zooming, multi-layered pie charts.
Krona charts will be generated by the pipeline for supported tools (Kraken2, Centrifuge, Kaiju, and MALT)
<details markdown="1">
<summary>Output files</summary>
- `krona/`
- `<tool_name>_<db_name>.html`: per-tool/per-database interactive HTML file containing hierarchical piecharts
</details>
The resulting HTML files can be loaded into your web browser for exploration. Each file will have a dropdown to allow you to switch between each sample aligned against the given database of the tool.
### MultiQC ### MultiQC