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Prettier in usage
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@ -547,12 +547,13 @@ To build a custom Centrifuge database, a user needs to download taxonomy files,
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In total, you need four components: a tab-separated file mapping sequence IDs to taxonomy IDs (`--conversion-table`), a tab-separated file mapping taxonomy IDs to their parents and rank, up to the root of the tree (`--taxonomy-tree`), a pipe-separated file mapping taxonomy IDs to a name (`--name-table`), and the reference sequences.
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In total, you need four components: a tab-separated file mapping sequence IDs to taxonomy IDs (`--conversion-table`), a tab-separated file mapping taxonomy IDs to their parents and rank, up to the root of the tree (`--taxonomy-tree`), a pipe-separated file mapping taxonomy IDs to a name (`--name-table`), and the reference sequences.
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An example of custom `seqid2taxid.map`:
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An example of custom `seqid2taxid.map`:
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```
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```
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NC_001133.9 4392
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NC_001133.9 4392
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NC_012920.1 9606
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NC_012920.1 9606
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NC_001134.8 4392
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NC_001134.8 4392
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NC_001135.5 4392
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NC_001135.5 4392
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```
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```
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```bash
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```bash
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centrifuge-download -o taxonomy taxonomy
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centrifuge-download -o taxonomy taxonomy
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