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Prettier in usage

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sofstam 2023-01-31 09:38:43 +01:00
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@ -547,12 +547,13 @@ To build a custom Centrifuge database, a user needs to download taxonomy files,
In total, you need four components: a tab-separated file mapping sequence IDs to taxonomy IDs (`--conversion-table`), a tab-separated file mapping taxonomy IDs to their parents and rank, up to the root of the tree (`--taxonomy-tree`), a pipe-separated file mapping taxonomy IDs to a name (`--name-table`), and the reference sequences. In total, you need four components: a tab-separated file mapping sequence IDs to taxonomy IDs (`--conversion-table`), a tab-separated file mapping taxonomy IDs to their parents and rank, up to the root of the tree (`--taxonomy-tree`), a pipe-separated file mapping taxonomy IDs to a name (`--name-table`), and the reference sequences.
An example of custom `seqid2taxid.map`: An example of custom `seqid2taxid.map`:
``` ```
NC_001133.9 4392 NC_001133.9 4392
NC_012920.1 9606 NC_012920.1 9606
NC_001134.8 4392 NC_001134.8 4392
NC_001135.5 4392 NC_001135.5 4392
``` ```
```bash ```bash
centrifuge-download -o taxonomy taxonomy centrifuge-download -o taxonomy taxonomy