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Update the dev branch with the filtlong update

This commit is contained in:
sofstam 2022-07-12 17:15:36 +02:00
parent 8082c7d108
commit 4a316df209
2 changed files with 8 additions and 1 deletions

View file

@ -12,7 +12,8 @@ process FILTLONG {
output:
tuple val(meta), path("*.fastq.gz"), emit: reads
path "versions.yml" , emit: versions
tuple val(meta), path("*.log") , emit: log
path "versions.yml" , emit: versions
when:
task.ext.when == null || task.ext.when
@ -27,6 +28,7 @@ process FILTLONG {
$short_reads \\
$args \\
$longreads \\
2> ${prefix}.log \\
| gzip -n > ${prefix}.fastq.gz
cat <<-END_VERSIONS > versions.yml

View file

@ -45,6 +45,11 @@ output:
type: file
description: Filtered (compressed) fastq file
pattern: "*.fastq.gz"
- log:
type: file
description: Standard error logging file containing summary statistics
pattern: "*.log"
authors:
- "@d4straub"
- "@sofstam"