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Update the dev branch with the filtlong update

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This commit is contained in:
sofstam 2022-07-12 17:15:36 +02:00
parent 8082c7d108
commit 4a316df209
2 changed files with 8 additions and 1 deletions
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4
modules/nf-core/modules/filtlong/main.nf generated
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@ -12,7 +12,8 @@ process FILTLONG {
output: output:
tuple val(meta), path("*.fastq.gz"), emit: reads tuple val(meta), path("*.fastq.gz"), emit: reads
path "versions.yml" , emit: versions tuple val(meta), path("*.log") , emit: log
path "versions.yml" , emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when
@ -27,6 +28,7 @@ process FILTLONG {
$short_reads \\ $short_reads \\
$args \\ $args \\
$longreads \\ $longreads \\
2> ${prefix}.log \\
| gzip -n > ${prefix}.fastq.gz | gzip -n > ${prefix}.fastq.gz
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml

5
modules/nf-core/modules/filtlong/meta.yml generated
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@ -45,6 +45,11 @@ output:
type: file type: file
description: Filtered (compressed) fastq file description: Filtered (compressed) fastq file
pattern: "*.fastq.gz" pattern: "*.fastq.gz"
- log:
type: file
description: Standard error logging file containing summary statistics
pattern: "*.log"
authors: authors:
- "@d4straub" - "@d4straub"
- "@sofstam"