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Update the dev branch with the filtlong update
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parent
8082c7d108
commit
4a316df209
2 changed files with 8 additions and 1 deletions
4
modules/nf-core/modules/filtlong/main.nf
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4
modules/nf-core/modules/filtlong/main.nf
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@ -12,7 +12,8 @@ process FILTLONG {
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output:
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tuple val(meta), path("*.fastq.gz"), emit: reads
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path "versions.yml" , emit: versions
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tuple val(meta), path("*.log") , emit: log
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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@ -27,6 +28,7 @@ process FILTLONG {
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$short_reads \\
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$args \\
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$longreads \\
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2> ${prefix}.log \\
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| gzip -n > ${prefix}.fastq.gz
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cat <<-END_VERSIONS > versions.yml
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5
modules/nf-core/modules/filtlong/meta.yml
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5
modules/nf-core/modules/filtlong/meta.yml
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@ -45,6 +45,11 @@ output:
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type: file
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description: Filtered (compressed) fastq file
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pattern: "*.fastq.gz"
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- log:
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type: file
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description: Standard error logging file containing summary statistics
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pattern: "*.log"
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authors:
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- "@d4straub"
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- "@sofstam"
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