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Update default values for host removal parameters

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This commit is contained in:
ljmesi 2022-05-03 11:03:48 +02:00
parent fa1c132635
commit 4b2a3789cd
1 changed files with 12 additions and 12 deletions
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24
nextflow.config
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@ -81,18 +81,18 @@ params {
save_runmerged_reads = false
// Host Removal
perform_shortread_hostremoval = false
shortread_hostremoval_reference = null
shortread_hostremoval_index = null
longread_hostremoval_index = null
save_hostremoval_index = false
save_hostremoval_mapped = false
save_hostremoval_unmapped = false
save_minimap2_hostremoval_index = false
save_minimap2_hostremoval_mapped = false
save_minimap2_hostremoval_unmapped = false
save_samtools_unmapped_bam = false
save_minimap2_unmapped_fq = false
perform_shortread_hostremoval = false
shortread_hostremoval_reference = null
shortread_hostremoval_index = null
save_hostremoval_index = false
save_hostremoval_mapped = false
save_hostremoval_unmapped = false
longread_hostremoval_index = null
save_minimap2_hostremoval_index = false
save_minimap2_hostremoval_mapped = false
save_samtools_unmapped_bam = false
save_minimap2_unmapped_fq = false
// MALT
run_malt = false