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fix: force UTF-8 in different locale?
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@ -158,7 +158,8 @@ if (!params.igenomes_ignore) {
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// See https://apeltzer.github.io/post/03-julia-lang-nextflow/ for details on that. Once we have a common agreement on where to keep Julia packages, this is adjustable.
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env {
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PYTHONNOUSERSITE = 1
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PYTHONNOUSERSITE = '1'
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PYTHONUTF8 = '1' // MetaPhlAn3 may fail with a UnicodeDecodeError if the locale is not set appropriately.
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R_PROFILE_USER = "/.Rprofile"
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R_ENVIRON_USER = "/.Renviron"
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JULIA_DEPOT_PATH = "/usr/local/share/julia"
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