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Reduce number of tests to check just each tool option is tested

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James A. Fellows Yates 2023-03-07 13:06:32 +01:00 committed by GitHub
parent 91a7a03f48
commit 54e8857233
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7
.github/workflows/ci.yml vendored
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@ -32,16 +32,9 @@ jobs:
- "--perform_longread_qc false" - "--perform_longread_qc false"
- "--perform_shortread_qc false" - "--perform_shortread_qc false"
- "--shortread_qc_tool fastp" - "--shortread_qc_tool fastp"
- "--shortread_qc_tool fastp --shortread_qc_mergepairs --shortread_qc_includeunmerged"
- "--shortread_qc_tool fastp --shortread_qc_mergepairs"
- "--shortread_qc_tool adapterremoval" - "--shortread_qc_tool adapterremoval"
- "--shortread_qc_tool adapterremoval --shortread_qc_mergepairs --shortread_qc_includeunmerged"
- "--shortread_qc_tool adapterremoval --shortread_qc_mergepairs"
- "--shortread_complexityfilter_tool bbduk" - "--shortread_complexityfilter_tool bbduk"
- "--shortread_complexityfilter_tool prinseqplusplus" - "--shortread_complexityfilter_tool prinseqplusplus"
- "--perform_runmerging"
- "--perform_runmerging --shortread_qc_mergepairs"
- "--shortread_complexityfilter false --perform_shortread_hostremoval"
steps: steps:
- name: Check out pipeline code - name: Check out pipeline code