millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-11 00:13:09 +00:00
Code Issues Releases Packages Activity

Reduce number of tests to check just each tool option is tested

Browse source
This commit is contained in:
James A. Fellows Yates 2023-03-07 13:06:32 +01:00 committed by GitHub
parent 91a7a03f48
commit 54e8857233
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 0 additions and 7 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
.github/workflows/ci.yml vendored
View file

@ -32,16 +32,9 @@ jobs:
- "--perform_longread_qc false"
- "--perform_shortread_qc false"
- "--shortread_qc_tool fastp"
- "--shortread_qc_tool fastp --shortread_qc_mergepairs --shortread_qc_includeunmerged"
- "--shortread_qc_tool fastp --shortread_qc_mergepairs"
- "--shortread_qc_tool adapterremoval"
- "--shortread_qc_tool adapterremoval --shortread_qc_mergepairs --shortread_qc_includeunmerged"
- "--shortread_qc_tool adapterremoval --shortread_qc_mergepairs"
- "--shortread_complexityfilter_tool bbduk"
- "--shortread_complexityfilter_tool prinseqplusplus"
- "--perform_runmerging"
- "--perform_runmerging --shortread_qc_mergepairs"
- "--shortread_complexityfilter false --perform_shortread_hostremoval"
steps:
- name: Check out pipeline code