Update samtools/bam2fq

2024-12-22 14:58:17 +00:00 · 2022-05-05 08:38:41 +02:00 · 2022-05-05 08:38:41 +02:00 · 59c7f5a5b1
commit 59c7f5a5b1
parent f4abbe280a
2 changed files with 3 additions and 3 deletions
--- a/modules.json
+++ b/modules.json
@ -70,7 +70,7 @@
                "git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b"
            },
            "samtools/bam2fq": {
-                "git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
+                "git_sha": "5510ea39fe638594bc26ac34cadf4a84bf27d159"
            },
            "samtools/view": {
                "git_sha": "6b64f9cb6c3dd3577931cc3cd032d6fb730000ce"
@ -80,4 +80,4 @@
            }
        }
    }
-}
+}
--- a/modules/nf-core/modules/samtools/bam2fq/main.nf
+++ b/modules/nf-core/modules/samtools/bam2fq/main.nf
@ -45,7 +45,7 @@ process SAMTOOLS_BAM2FQ {
            bam2fq \\
            $args \\
            -@ $task.cpus \\
-            $inputbam >${prefix}_interleaved.fq.gz
+            $inputbam | gzip --no-name > ${prefix}_interleaved.fq.gz

        cat <<-END_VERSIONS > versions.yml
        "${task.process}":