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Update samtools/bam2fq

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This commit is contained in:
ljmesi 2022-05-05 08:38:41 +02:00
parent f4abbe280a
commit 59c7f5a5b1
2 changed files with 3 additions and 3 deletions
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4
modules.json
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@ -70,7 +70,7 @@
"git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b" "git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b"
}, },
"samtools/bam2fq": { "samtools/bam2fq": {
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773" "git_sha": "5510ea39fe638594bc26ac34cadf4a84bf27d159"
}, },
"samtools/view": { "samtools/view": {
"git_sha": "6b64f9cb6c3dd3577931cc3cd032d6fb730000ce" "git_sha": "6b64f9cb6c3dd3577931cc3cd032d6fb730000ce"
@ -80,4 +80,4 @@
} }
} }
} }
} }

2
modules/nf-core/modules/samtools/bam2fq/main.nf generated
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@ -45,7 +45,7 @@ process SAMTOOLS_BAM2FQ {
bam2fq \\ bam2fq \\
$args \\ $args \\
-@ $task.cpus \\ -@ $task.cpus \\
$inputbam >${prefix}_interleaved.fq.gz $inputbam | gzip --no-name > ${prefix}_interleaved.fq.gz
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":