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Update samtools/bam2fq
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parent
f4abbe280a
commit
59c7f5a5b1
2 changed files with 3 additions and 3 deletions
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@ -70,7 +70,7 @@
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"git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b"
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"git_sha": "f1c5384c31e985591716afdd732cf8c2ae29d05b"
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},
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},
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"samtools/bam2fq": {
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"samtools/bam2fq": {
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"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
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"git_sha": "5510ea39fe638594bc26ac34cadf4a84bf27d159"
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},
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},
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"samtools/view": {
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"samtools/view": {
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"git_sha": "6b64f9cb6c3dd3577931cc3cd032d6fb730000ce"
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"git_sha": "6b64f9cb6c3dd3577931cc3cd032d6fb730000ce"
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@ -80,4 +80,4 @@
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}
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}
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}
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}
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}
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}
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}
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}
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2
modules/nf-core/modules/samtools/bam2fq/main.nf
generated
2
modules/nf-core/modules/samtools/bam2fq/main.nf
generated
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@ -45,7 +45,7 @@ process SAMTOOLS_BAM2FQ {
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bam2fq \\
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bam2fq \\
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$args \\
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$args \\
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-@ $task.cpus \\
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-@ $task.cpus \\
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$inputbam >${prefix}_interleaved.fq.gz
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$inputbam | gzip --no-name > ${prefix}_interleaved.fq.gz
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cat <<-END_VERSIONS > versions.yml
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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"${task.process}":
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