Fix staging

1 year ago · 5d95151f54
parent e8b85d0b62
commit 5d95151f54
1 changed files with 3 additions and 1 deletions
--- a/subworkflows/local/standardisation_profiles.nf
+++ b/subworkflows/local/standardisation_profiles.nf
@ -33,7 +33,9 @@ workflow STANDARDISATION_PROFILES {
                            .groupTuple ()
                            .map { [ it[0], it[1].flatten() ] }

-    TAXPASTA_MERGE (ch_input_for_taxpasta, params.taxpasta_taxonomy_dir ? params.taxpasta_taxonomy_dir : [], [])
+    ch_taxpasta_tax_dir = params.taxpasta_taxonomy_dir ? Channel.fromPath(params.taxpasta_taxonomy_dir, checkIfExists: true).collect() : []
+
+    TAXPASTA_MERGE (ch_input_for_taxpasta, ch_taxpasta_tax_dir, [])

    /*
        Split profile results based on tool they come from